View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_14 (Length: 439)
Name: NF7169_low_14
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 106 - 414
Target Start/End: Original strand, 4286173 - 4286482
Alignment:
| Q |
106 |
attcgtctgagaataatatacacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgaggataattaagtaagctaact |
205 |
Q |
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| T |
4286173 |
attcatctgagaatgatatacacctccatagagcattcaagttttttgataaaaatcaatctcggtatattgaacttgaggataattaagtaagctaact |
4286272 |
T |
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| Q |
206 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagc-nnnnnnnntcacataaaagtagaggtctgttcaattttca |
304 |
Q |
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| T |
4286273 |
cttcatttaagacaagactctgttatcattcccttggcccatcatggcataaccttagcaaaaaagaatcacataaacgtagaggtctgttcaattttca |
4286372 |
T |
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| Q |
305 |
ctgggcataacagtaccatgttctacaagttcgatagaggtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaag |
404 |
Q |
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| T |
4286373 |
ccgggcataacagtaccatgttctactagttcgatagaggtctcatctgcaagcaaatacataagttacaatcactcaccaccaagttattatattgaag |
4286472 |
T |
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| Q |
405 |
attgaaccaa |
414 |
Q |
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| T |
4286473 |
attgaaccaa |
4286482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 4284582 - 4284670
Alignment:
| Q |
1 |
ccgcgaaattgtaaagaaacttgttattgggagtagtgctattagtacactctttgttttgnnnnnnngctaatacaccttcttattgttgaaa |
94 |
Q |
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| T |
4284582 |
ccgcgaaattgtgaagaaacttgttatttggagtagtgctattagtacactctttttttt-----tttgctaatacaccttcttattgttgaaa |
4284670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 21387211 - 21387149
Alignment:
| Q |
125 |
acacctccatagagcattcaagttttttgataaaaatcaatctgggtatattgaacttgagga |
187 |
Q |
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| T |
21387211 |
acacctccaaagagcattccaattttttgataaaaacgaatctgggtttattgaacttgagga |
21387149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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