View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7169_low_15 (Length: 425)
Name: NF7169_low_15
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 248 - 411
Target Start/End: Original strand, 2647297 - 2647460
Alignment:
| Q |
248 |
ggtctagatctcgagatgctattttaattgtgagatgtatgatcttttctcatgcctaatagactatgtcaatttaagatttctttgaggtttgtctcta |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2647297 |
ggtctagatctcgagatgctattttaattgtgagatgtatgatcttttctcatgcctaatagactatgtcaatttaagatttctttgaggtttgtctcta |
2647396 |
T |
|
| Q |
348 |
ggttcatatattaatgaaaagataaaatatgtaggatcttatataaggaaggtgtaagtataat |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2647397 |
ggttcatatattaatgaaaagataaaatatgtaggatcttatataaggaaggtgtaagtataat |
2647460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 2647069 - 2647261
Alignment:
| Q |
19 |
agttgggtcattagagagagtccagagatcatcacattagatctaagagcaatcacaaaagtaagttggacaccatatctaaacccaaagacttacgaca |
118 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2647069 |
agttgggccattagggagagtccggagatcatcacattagacctacgagcaatcacaaaagtgagttggacaccatatctaaacccaaagacttacgaca |
2647168 |
T |
|
| Q |
119 |
ttaagtatatgagtcacatatatattactcaacattcagtttttcttctatcgttagacttgttactcacatttaccacaacaaaatgatttc |
211 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2647169 |
ttaaatatacgaatcacatatatattactcaacattcattttttcttctatcgtgagacttgttactcacatttaccacaacaaaatgatttc |
2647261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University