View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_17 (Length: 394)
Name: NF7169_low_17
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 33 - 383
Target Start/End: Original strand, 4858099 - 4858438
Alignment:
| Q |
33 |
acctgctgttaggttggtttt--ttaatgttttgggcacaaatcctcggtttaagccaataactccatcctctgccacaatatctgcatcaaccaaaaaa |
130 |
Q |
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| T |
4858099 |
acctgctgttaggttgattttttttaatgttttgggcacgaatcctcggtttaagccagttactccatcctgtgccacaatatctgcatcaaccaaaaaa |
4858198 |
T |
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| Q |
131 |
ttaatatggtatttacacaagaacactgaagaaaataaacttcaactattccccagtgtgtgcacaacaaatataatgttgcagtttttgcaaaaataag |
230 |
Q |
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| T |
4858199 |
ttaatatggtatttacacaagaacactgaagcaaataaacttcaactattccccagtgtgtgcac---------------gcagtttttgcagaaataag |
4858283 |
T |
|
| Q |
231 |
ggaattaattattcttatacatttgttactaattcaaattattcgactataatgtgtgtgcacaacaaatataacgtgtccatgaccg--gaaaatgatg |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||||||| ||||| | |||| ||||||||| |
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| T |
4858284 |
ggaattaattattcttatacatttgttactaattcaaattattcgaatgtaatgtctgtgcgcaacaaatataatgtgtcagtcaccgtaaaaaatgatg |
4858383 |
T |
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| Q |
329 |
aagctaaaaataaaagctgagaaatctataaggtgtacccttcgattgcatctct |
383 |
Q |
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| T |
4858384 |
aagctaaaaatgaaaactgagcgatctataaggattacccttcaattgcatctct |
4858438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 254 - 383
Target Start/End: Original strand, 4838342 - 4838471
Alignment:
| Q |
254 |
tgttactaattcaaattattcgactataatgtgtgtgcacaacaaatataacgtgtccatgaccggaaaatgatgaagctaaaaataaaagctgagaaat |
353 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||| |
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| T |
4838342 |
tgttactggttcaaattattcgactataatgtgtgtgcacaacaaatataatgtgtccatgaccgtgaaatgatgaagctaaaaataaaagccgagcaat |
4838441 |
T |
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| Q |
354 |
ctataaggtgtacccttcgattgcatctct |
383 |
Q |
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| T |
4838442 |
ctataaggtgtgcccttcgattgcatctct |
4838471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 51 - 285
Target Start/End: Complemental strand, 5176383 - 5176125
Alignment:
| Q |
51 |
tttttaatgttttgggcacaaatcctcggtttaagccaataactccatcctctgccacaatatctgcatcaaccaaaaaattaatatggtatttacacaa |
150 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |||| |||||||| |||||| |
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| T |
5176383 |
tttttaatgttttgggcatgaatcctcggtttaagccaatagctccatcttgtgccacaatacttgcatcaaccaaaaacttaacatggtattcacacaa |
5176284 |
T |
|
| Q |
151 |
gaacactgaagaaaataaacttcaa-----ctattccccagtgtgtgc---------------acaacaaatataa----tgttgcagtttttgcaaaaa |
226 |
Q |
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| T |
5176283 |
gaacactgaagcatataaacttaaactattctattccccagtgtgtgcttaccactgattactataacaactaaaaggaatgttgcagtttttgcacaaa |
5176184 |
T |
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| Q |
227 |
taagggaattaattattcttatacatttgttactaattcaaattattcgactataatgt |
285 |
Q |
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|||||| |||||||| |||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
5176183 |
taagggtattaattaatcttatacatttgttaataattcaaataattcgactataatgt |
5176125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 5133290 - 5133392
Alignment:
| Q |
33 |
acctgctgttaggttggttttttaatgttttgggcacaaatcctcggtttaagccaataactccatcctctgccacaatatctgcatcaaccaaaaaatt |
132 |
Q |
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|||||||||| ||| |||||||||| | ||||||||||||||||||| ||||||||||||||||| | |||||||||| || |||||| ||||| ||| |
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| T |
5133290 |
acctgctgtttggtaggttttttaaagcattgggcacaaatcctcggtacaagccaataactccatcttgtgccacaataccttcatcaatcaaaatatt |
5133389 |
T |
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| Q |
133 |
aat |
135 |
Q |
| |
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||| |
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| T |
5133390 |
aat |
5133392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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