View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_18 (Length: 386)
Name: NF7169_low_18
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 81 - 369
Target Start/End: Original strand, 24309357 - 24309647
Alignment:
| Q |
81 |
ggtacccttcataagagacatagtagttcaattccttctattta--aatgctttggttggtgctatttaacattctcaaaaacaaaacctaacatacaat |
178 |
Q |
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| T |
24309357 |
ggtacccttcataagagacatagtagttcaattccttctatatataaattctttggttctatttatttaccattctcaaaaacaaaacctaacatacaat |
24309456 |
T |
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| Q |
179 |
ttttgttttcttcttaggatggagccacctcatcacattttcttagcaagtgaagaggaatgtcatagtagtgaatctggatggactatgtatattggtt |
278 |
Q |
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| T |
24309457 |
ttttgttttcttcttaggatggagccacctcatcacattttcttagcaagtgaagaggaatgtcatagtagtgaatctggatggaccatgtatattggtt |
24309556 |
T |
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| Q |
279 |
ctccaataaatcatgaagatgaaaattttgatcatgattataaagataataataaagtgcattattatcaagagattcataaaactcaagt |
369 |
Q |
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| T |
24309557 |
ctccaataaatcatgaggatgaaaattttgatcatgattataaagataataataaagtgcattattatcaagagattcatcaaactcaagt |
24309647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 24309277 - 24309307
Alignment:
| Q |
1 |
gtattttcaggtgttcagaacacttctatag |
31 |
Q |
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| T |
24309277 |
gtattttcaggtgttcagaacacttctatag |
24309307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 45887869 - 45887819
Alignment:
| Q |
226 |
aagtgaagaggaatgtcatagtagtgaatctggatggactatgtatattgg |
276 |
Q |
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| T |
45887869 |
aagtgaagaggaatgtgaaagcagtgaatcgggatggaccatgtatattgg |
45887819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 5718999 - 5718962
Alignment:
| Q |
245 |
agtagtgaatctggatggactatgtatattggttctcc |
282 |
Q |
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| T |
5718999 |
agtagtgaatctggttggactatgtatattgattctcc |
5718962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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