View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7169_low_2 (Length: 712)
Name: NF7169_low_2
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 369
Target Start/End: Complemental strand, 386624 - 386270
Alignment:
| Q |
14 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386624 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttcctcaagttcgttgtattcttgagttcctatttcaggcatgagtcggcgtacggctttc |
386525 |
T |
|
| Q |
114 |
tttttaatttgaatctttgacacttttggacagataattgttgttgttgaatcttcttgagaaatcttcaaggtggaactttttccaagttttgattatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
386524 |
tttttaatttgaatctttgacacttttggacagataattattgttgttgaatcttcttgagaaatcttcaag-tggaactttttacaagttttgattatt |
386426 |
T |
|
| Q |
214 |
tgaatacttcgagcgaggatagtagttaccttagatgataatttgtggcttctttgatacattttgactttcaacgagataatgctctaactagaaatgt |
313 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386425 |
tgaatacttcgagcgaggatagtagtaaccttagatgataatttgtggcttctttgatacattttgactttcaacgagataatgctctaactagaaatgt |
386326 |
T |
|
| Q |
314 |
tgaaagaacacgtatgaaactcatttacaagatatatttttcattcttgcatacta |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386325 |
tgaaagaacacgtatgaaactcatttacaagatatatttttcattcttgcatacta |
386270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 365 - 677
Target Start/End: Complemental strand, 386245 - 385952
Alignment:
| Q |
365 |
tactatattaaaacaacccacatgtttcatcgatttgtaagttacatacatgtaaacctgtcaactaaaaactcaccagaagggcaatattatgatccca |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386245 |
tactatattaaaacaacccacatgtttcatcgattt---------------gtaaacctgtcaactaaaaactcaccagaagggcaatattatgatccca |
386161 |
T |
|
| Q |
465 |
ctacctttattgtggcataagccattgaaatatagtttacatgggtccgtccaaatttacataatattgttcaaagttggaataattgtgaatataacga |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386160 |
ctacctttattgtggcataagccattgaaatatagtttacatgg----gtccaaatttacataatattgttcaaagttggaataattgtgaatataacga |
386065 |
T |
|
| Q |
565 |
ttttctatcccttcatcaggaaaccttaagaagtatcttattatggttcattgtcacctctttaaccgcccccatcttttattgaagctacattgcatga |
664 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
386064 |
ttttatatcccttcatcaggcaaccttaagaagtatcttattatggttcattgtcacctctttaaccgcccccatcttttattgaagctacattgcatga |
385965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 100
Target Start/End: Complemental strand, 36926533 - 36926447
Alignment:
| Q |
14 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtcg |
100 |
Q |
| |
|
||||||||| |||||||| | |||||| |||| ||||||||||| |||||| ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
36926533 |
ctgtgaagtgattgttttcagaaaagctttgtcaggattttccaaaagttcattgtactcttgagttcctttttcaggcatgagtcg |
36926447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 49608273 - 49608358
Alignment:
| Q |
14 |
ctgtgaagtaattgtttttaaaaaagccttgtgaggattttccacaagttcgttgtattcttgagttcctatttcaggcatgagtc |
99 |
Q |
| |
|
||||||||||||||| || ||||||| ||||| ||||||||||||||||| |||||||||||||| | | ||||||||||||||| |
|
|
| T |
49608273 |
ctgtgaagtaattgtcttcaaaaaaggcttgtcaggattttccacaagttgattgtattcttgagtccttttttcaggcatgagtc |
49608358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University