View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_21 (Length: 370)
Name: NF7169_low_21
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 353
Target Start/End: Original strand, 17277299 - 17277638
Alignment:
| Q |
14 |
agagggtacgtacacttttgtctttagaaaaaattgactacaaatttttgtcttgtagctagcttcttcttccaaccattcataataatctcaattcttc |
113 |
Q |
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| T |
17277299 |
agagggtacgtacacttttgtctttagaaaaaattgactacaaatttttgtcttgtagctagcttcttcttccaaccattcataataatctcaattcttc |
17277398 |
T |
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| Q |
114 |
atgttgtcacatttgttcaaccatatatcaaaatcaagctttacaagagcatctaatgtacttttgtccaaaagcaccttcattgtacactatggtagtg |
213 |
Q |
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| T |
17277399 |
atgttgtcacatttgttcaaccatatatcaaaatcaagctttacaagagcatctaatgtacttttgtccaaaagcaccttcattgtacactatgttagtg |
17277498 |
T |
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| Q |
214 |
gtgcattttagtcatccaatccaagaattataaatgagaatagttatagccacaggtatatgtcgattcctaagattnnnnnnncatttaaatagtgtgt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17277499 |
gtgcattttagtcatccaatccaagaattataaatgagaatagttatagccacaggtatatgtcgattcctaagattaaaaaaacatttaaatagtgtgt |
17277598 |
T |
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| Q |
314 |
ttgaaaaaataaatgtggaaagtcctttgacaataataat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
17277599 |
ttgaaaaaataaatgtggaaagtcctttgacaataataat |
17277638 |
T |
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