View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_23 (Length: 352)
Name: NF7169_low_23
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_23 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 27 - 352
Target Start/End: Original strand, 7363854 - 7364177
Alignment:
| Q |
27 |
ttgttatcaatatcaaaaatttgtaaaagaagtgtatgaaacgttaaggggtagtccacaatggaatgaaatgttgttcgcgattacttacgacgaacat |
126 |
Q |
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| T |
7363854 |
ttgttatcaatatcaaaaatttgtaaaag---tgtatgaaacgttaaggggtagtccacaatggaatgaaatgttgttcgtgattacttacgaccaacat |
7363950 |
T |
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| Q |
127 |
ggaggattttacgatcacatgccaacaccggtggacggagttcctactccagatgacattgttggtcctgagccattcaagtttaagtttgataggctgg |
226 |
Q |
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| T |
7363951 |
ggaggattttacgatcacgtgccaacgccggtggacggagttcctactccagatgacattgttggtcctgagccattcaagtttaagtttgataggctgg |
7364050 |
T |
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| Q |
227 |
tgttagggttccaaccatc-tttatttctccatagattgagccaggaaaaggtaagaataagatgcatatgtatgcaaacaaaaataattcttacactca |
325 |
Q |
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| T |
7364051 |
tgttagggttccaaccatcttttatttctccatagattgagccaggaaaaggtaagaataagatgcatatgtatgcaaacaaaaataattcttacactca |
7364150 |
T |
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| Q |
326 |
ttattattagtttattccataaaacat |
352 |
Q |
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| T |
7364151 |
ttattattagtttattccataaaacat |
7364177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 40 - 334
Target Start/End: Original strand, 2829623 - 2829918
Alignment:
| Q |
40 |
caaaaatttgtaaaagaagtgtatgaaacgttaaggggtagtccacaatggaatgaaatgttgttcgcgattacttacgacgaacatggaggattttacg |
139 |
Q |
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| T |
2829623 |
caaaaattaataaaagaagtgtatgaagcattaagaggcagtccacaatggaatgaaatgttgtttgtgattacatacgacgaacatggaggattttacg |
2829722 |
T |
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| Q |
140 |
atcacatgccaacaccggtggacggagttcctactccagatgacattgttggtcctgagccattcaagtttaagtttgataggc-tggtgttagggttcc |
238 |
Q |
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| T |
2829723 |
atcacgtgccaacaccggtggacggagttcctagtccagatgacattgttggtcctgaaccattcaagtttaagtttgataggcttggtgttagggttcc |
2829822 |
T |
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| Q |
239 |
aaccatctttatttctccatagattgagccaggaaaaggtaagaataagatgcatatgtatgcaaacaaaaataattcttacactcattattatta |
334 |
Q |
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| T |
2829823 |
aaccatctttatttctccatggattgagccaggaaaaggtaagaataagatgcatatgcatgcaaacaaaaatagttcttacactcattattatta |
2829918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 40 - 328
Target Start/End: Original strand, 2788368 - 2788657
Alignment:
| Q |
40 |
caaaaatttgtaaaagaagtgtatgaaacgttaaggggtagtccacaatggaatgaaatgttgttcgcgattacttacgacgaacatggaggattttacg |
139 |
Q |
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| T |
2788368 |
caaaaatttgtaaaagaagtgtatgaagcattaagaggcagtccacaatggaatgaaatgttgtttgtgattacttacgacgaacacggaggattttacg |
2788467 |
T |
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| Q |
140 |
atcacatgccaacaccggtggacggagttcctactccagatgacattgttggtcctgagccattcaagtttaagtttgataggc-tggtgttagggttcc |
238 |
Q |
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||||| ||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2788468 |
atcacgtgccaacgccggtggacggaattcctagtccagatgacattgttggtcctgagccattcaagtttaagtttgataggcttggtgttagggttcc |
2788567 |
T |
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| Q |
239 |
aaccatctttatttctccatagattgagccaggaaaaggtaagaataagatgcatatgtatgcaaacaaaaataattcttacactcatta |
328 |
Q |
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| T |
2788568 |
aaccatctttatttctccatggattgagccaggaaaaggtaagaataagatgcatatgcatgcaaacaaaaatagttcttacactcatta |
2788657 |
T |
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