View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_24 (Length: 343)
Name: NF7169_low_24
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 327
Target Start/End: Original strand, 19567665 - 19567974
Alignment:
| Q |
18 |
ataaattctggtaattctttcagtaaaatcatcctgattgtgtacaaaaagtagcaacttgtacttgtcattgacttgatcatagccaaaaccatgatat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19567665 |
ataaattctggtaattctttcagtaaaatcatcctgattgtgtacaaaaagtagcaacttgtacttgtcattgacttgatcatagccaaaaccatgatat |
19567764 |
T |
|
| Q |
118 |
gtaacaagctttttatcaaaagaagcaacaattggaaatgtattggatttcaagttgatcaaaggattccacaatctgaaattagattgagaatcatcat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19567765 |
gtaacaagctttttatcaaaagaagcaacaattggaaatgtatccgatttcaagttgatcaaaggattccacaatctgaaattagattgagaatcatcat |
19567864 |
T |
|
| Q |
218 |
acaaacaaagtaacccattgcacgaacctagaataccgtatctgtgcgtcatgcctatagtaacgggttgaacaagggttgatggattttccaacaatgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19567865 |
acaaacaaagtaacccattgcacgaacctagaataccgtatctgtgcgtcatgcctatagtaacgggttgaacaagggttgatggattttccaacaatgg |
19567964 |
T |
|
| Q |
318 |
cttcacagca |
327 |
Q |
| |
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|||||||||| |
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| T |
19567965 |
cttcacagca |
19567974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 23682104 - 23681800
Alignment:
| Q |
18 |
ataaattctggtaattctttcagtaaaatcatcctgattgtgtacaaaaagtagcaacttgtacttgtcattgacttgatcatagccaaaaccatgatat |
117 |
Q |
| |
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|||||||||||||| | ||||| |||||||||||| |||| |||||| || || |||||||||||| ||||| ||||||||||| ||||||||||||| | |
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| T |
23682104 |
ataaattctggtaactttttcactaaaatcatccttattgagtacaacaactaacaacttgtacttatcattcacttgatcatacccaaaaccatgatgt |
23682005 |
T |
|
| Q |
118 |
gtaacaagctttttatcaaaagaagcaacaattggaaatgtattggatttcaagttgatcaaaggattccacaatctgaaattagattgagaatcatcat |
217 |
Q |
| |
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|| | || ||| ||||| || |||||||||||||||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||| ||||| |
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| T |
23682004 |
gtgataatcttattatcgaacgaagcaacaattggaaatccgttcgatttcaatttgatagaaggattacacaatctgaaattagattgagaagaatcat |
23681905 |
T |
|
| Q |
218 |
acaaacaaagtaacccattgcacgaacctagaataccgtatctgtgcgtcatgcctatagtaacgggttgaacaagggttgatggattttccaacaatgg |
317 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |||| |||| ||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
23681904 |
acaaacaaagcaacccattgcacgaacctagaatattgtatttgtgtctcatggttatagtaacgggttcaacaggggttgatggattttccaacaatgg |
23681805 |
T |
|
| Q |
318 |
cttca |
322 |
Q |
| |
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||||| |
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|
| T |
23681804 |
cttca |
23681800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 257
Target Start/End: Original strand, 43986545 - 43986733
Alignment:
| Q |
69 |
tagcaacttgtacttgtcattgacttgatcatagccaaaaccatgatatgtaacaagctttttatcaaaagaagcaacaattggaaatgtattggatttc |
168 |
Q |
| |
|
||||| |||||||||||| || | ||| ||||||||||||||||||||| |||| | |||||| | ||||||| ||||| |||| |||||||| |
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| T |
43986545 |
tagcaccttgtacttgtcgttaatttggtcatagccaaaaccatgatatacgacaacgtcattatcagacgaagcaatggttggatatgttctggatttc |
43986644 |
T |
|
| Q |
169 |
aagttgatcaaaggattccacaatctgaaattagattga-gaatcatcatacaaacaaagtaacccattgcacgaacctagaataccgta |
257 |
Q |
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|| ||||| |||||||||||||| |||||||||||||| |||| |||||||||||||| || |||||||| |||||||||||| |||| |
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| T |
43986645 |
aaattgatagaaggattccacaatgtgaaattagattgatgaat-atcatacaaacaaatcaaaccattgcatgaacctagaatatcgta |
43986733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 44005199 - 44005302
Alignment:
| Q |
149 |
ttggaaatgtattggatttcaagttgatcaaaggattccacaatctgaaattagattgagaatcatcatacaaacaaagtaacccattgcacgaacctag |
248 |
Q |
| |
|
||||| |||| ||||||||||| ||||| |||||||||| ||| |||||||| |||| || ||||||||||||||| |||||||| || ||||| || |
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|
| T |
44005199 |
ttggagatgttttggatttcaaattgatagaaggattccataatgtgaaattatgttgataaatatcatacaaacaaagcaacccattacatgaaccaag |
44005298 |
T |
|
| Q |
249 |
aata |
252 |
Q |
| |
|
|||| |
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|
| T |
44005299 |
aata |
44005302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 112
Target Start/End: Original strand, 44005119 - 44005162
Alignment:
| Q |
69 |
tagcaacttgtacttgtcattgacttgatcatagccaaaaccat |
112 |
Q |
| |
|
||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
44005119 |
tagcaccttgtacttgtcattaatttgatcatagccaaaaccat |
44005162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 237
Target Start/End: Complemental strand, 42694065 - 42693898
Alignment:
| Q |
70 |
agcaacttgtacttgtcattgacttgatcatagccaaaaccatgatatgtaacaagctttttatcaaaagaagcaacaattggaaatgtattggatttca |
169 |
Q |
| |
|
|||| ||||||||| ||||| || |||||||||||||||||||||||||| | || ||| | |||| | || || ||||| |||| | |||||||| |
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|
| T |
42694065 |
agcaccttgtacttatcattaacatgatcatagccaaaaccatgatatgtcataaacttataatcagacaaaacattggttggagatgtttcggatttca |
42693966 |
T |
|
| Q |
170 |
agttgatcaaaggattccacaatctgaaattagattgagaatcatcatacaaacaaagtaacccattg |
237 |
Q |
| |
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| ||||| |||||||||||||| |||||||| |||| |||||||||||||||| || |||||| |
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| T |
42693965 |
aattgatagaaggattccacaatgtgaaattaaattggctgacatcatacaaacaaagcaaaccattg |
42693898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 9363978 - 9363931
Alignment:
| Q |
70 |
agcaacttgtacttgtcattgacttgatcatagccaaaaccatgatat |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
9363978 |
agcaacttgtacttgtcattaacttgatcatagccaaaaccataatat |
9363931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 8838152 - 8838199
Alignment:
| Q |
70 |
agcaacttgtacttgtcattgacttgatcatagccaaaaccatgatat |
117 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
8838152 |
agcaacttgtacttgtgattaacttgatcatagccaaaaccataatat |
8838199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 45078125 - 45078228
Alignment:
| Q |
149 |
ttggaaatgtattggatttcaagttgatcaaaggattccacaatctgaaattagattgagaatcatcatacaaacaaagtaacccattgcacgaacctag |
248 |
Q |
| |
|
||||| |||| ||||||| |||||||| |||||||||||||||||||||| || |||| ||||| ||||||||| ||||||||||| ||||||| |
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| T |
45078125 |
ttggagatgttttggattcgaagttgatagaaggattccacaatctgaaattgaatcgagaggaatcatgcaaacaaagcaacccattgcatgaacctat |
45078224 |
T |
|
| Q |
249 |
aata |
252 |
Q |
| |
|
|||| |
|
|
| T |
45078225 |
aata |
45078228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 252
Target Start/End: Original strand, 45089447 - 45089550
Alignment:
| Q |
149 |
ttggaaatgtattggatttcaagttgatcaaaggattccacaatctgaaattagattgagaatcatcatacaaacaaagtaacccattgcacgaacctag |
248 |
Q |
| |
|
||||| |||| ||||||| ||| ||||| |||| |||||||||||||||| |||| || | ||||| ||||||||| ||||||||||| ||||||| |
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| T |
45089447 |
ttggagatgttttggattccaaattgatagaagggttccacaatctgaaataagatcgaaaggaatcatgcaaacaaagcaacccattgcatgaacctat |
45089546 |
T |
|
| Q |
249 |
aata |
252 |
Q |
| |
|
|||| |
|
|
| T |
45089547 |
aata |
45089550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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