View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7169_low_26 (Length: 269)
Name: NF7169_low_26
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 8429827 - 8430066
Alignment:
| Q |
14 |
atattagaacaagatagagagatgtgagatgtacctcatttctcattacatgccaaagcatgttctgactaattatagaagttgattaccttataccaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8429827 |
atattagaacaagatagagagatgtgagatatacctcatttctcattacatgccaaagcatgttctgactaattatagaagttgattaccttataccaag |
8429926 |
T |
|
| Q |
114 |
aacttactatgtttttccagtgcctctagagtgatgcttaagggatgctctctcgtgacaatccaatcgtgataagataatggtgaggttccttgtttga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8429927 |
aacttactatgtttttccagtgcctctagagtgatgcttaatggatgctctctcgtgacaatccaatcgtgataagagaatggtgaggttccttgtttga |
8430026 |
T |
|
| Q |
214 |
gtttctcttgtacaccttcaaaacatttccactcataatg |
253 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8430027 |
gtttctcttgtacaccttcaacacatttccactcataatg |
8430066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University