View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7169_low_28 (Length: 266)

Name: NF7169_low_28
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7169_low_28
NF7169_low_28
[»] chr2 (48 HSPs)
chr2 (1-240)||(29600707-29600949)
chr2 (65-240)||(4015056-4015232)
chr2 (66-240)||(43328886-43329061)
chr2 (71-240)||(38340808-38340978)
chr2 (110-248)||(33416916-33417055)
chr2 (66-219)||(43329257-43329411)
chr2 (66-182)||(7780288-7780405)
chr2 (65-240)||(40969593-40969767)
chr2 (66-209)||(12252097-12252242)
chr2 (67-160)||(30802970-30803063)
chr2 (70-209)||(30802018-30802158)
chr2 (67-209)||(6233530-6233673)
chr2 (67-142)||(10424885-10424960)
chr2 (66-240)||(29905405-29905580)
chr2 (66-143)||(29947812-29947889)
chr2 (66-142)||(28420109-28420185)
chr2 (66-157)||(39489214-39489305)
chr2 (67-157)||(4014295-4014385)
chr2 (70-160)||(10425774-10425864)
chr2 (66-160)||(36510807-36510901)
chr2 (69-142)||(29948719-29948792)
chr2 (67-242)||(39462500-39462676)
chr2 (77-209)||(28420179-28420312)
chr2 (67-171)||(9089386-9089489)
chr2 (89-183)||(9088716-9088811)
chr2 (67-152)||(2529359-2529444)
chr2 (69-128)||(33002018-33002077)
chr2 (67-138)||(39186074-39186145)
chr2 (66-160)||(40156427-40156524)
chr2 (66-116)||(2528715-2528765)
chr2 (69-123)||(33002289-33002343)
chr2 (69-135)||(37321220-37321286)
chr2 (66-128)||(39211539-39211601)
chr2 (66-142)||(41273196-41273275)
chr2 (102-189)||(39489953-39490041)
chr2 (130-240)||(2270835-2270946)
chr2 (69-128)||(7779675-7779734)
chr2 (70-128)||(36509969-36510028)
chr2 (1-50)||(33416845-33416894)
chr2 (107-189)||(38779635-38779718)
chr2 (66-116)||(39461917-39461970)
chr2 (133-222)||(2528634-2528724)
chr2 (70-128)||(15488127-15488185)
chr2 (77-139)||(39033114-39033176)
chr2 (77-106)||(43982190-43982219)
chr2 (133-236)||(33001935-33002039)
chr2 (136-239)||(35935162-35935266)
chr2 (65-113)||(39210925-39210973)
[»] chr8 (39 HSPs)
chr8 (66-240)||(43519848-43520024)
chr8 (1-240)||(31745877-31746115)
chr8 (1-240)||(42732672-42732905)
chr8 (66-240)||(25994393-25994568)
chr8 (66-209)||(36344981-36345125)
chr8 (1-207)||(44886694-44886891)
chr8 (66-240)||(3695314-3695489)
chr8 (70-208)||(27502523-27502662)
chr8 (66-189)||(38133168-38133292)
chr8 (66-160)||(38604199-38604293)
chr8 (66-189)||(30025009-30025133)
chr8 (66-183)||(21248176-21248294)
chr8 (66-160)||(43363211-43363305)
chr8 (66-209)||(2712380-2712524)
chr8 (70-208)||(38603289-38603428)
chr8 (69-160)||(27501628-27501719)
chr8 (67-142)||(31185430-31185505)
chr8 (70-160)||(2335103-2335193)
chr8 (66-160)||(44933887-44933981)
chr8 (67-128)||(30026212-30026273)
chr8 (65-160)||(28617596-28617689)
chr8 (67-171)||(41859152-41859256)
chr8 (70-142)||(43362357-43362429)
chr8 (70-208)||(914696-914834)
chr8 (69-160)||(32584080-32584170)
chr8 (67-158)||(40745236-40745327)
chr8 (65-152)||(915621-915705)
chr8 (70-142)||(28618395-28618466)
chr8 (101-240)||(45251980-45252128)
chr8 (66-116)||(41858568-41858618)
chr8 (120-240)||(4529234-4529355)
chr8 (66-171)||(45252552-45252656)
chr8 (66-160)||(5532979-5533070)
chr8 (69-128)||(22960680-22960739)
chr8 (70-116)||(32584974-32585020)
chr8 (82-183)||(35645922-35646027)
chr8 (66-128)||(34798788-34798850)
chr8 (77-106)||(486103-486132)
chr8 (66-142)||(10749622-10749701)
[»] chr3 (46 HSPs)
chr3 (65-248)||(42148231-42148415)
chr3 (65-240)||(2063157-2063333)
chr3 (67-209)||(14042898-14043041)
chr3 (66-240)||(31977603-31977778)
chr3 (67-209)||(32744104-32744247)
chr3 (66-171)||(55175676-55175781)
chr3 (70-196)||(11248545-11248672)
chr3 (70-209)||(11269286-11269426)
chr3 (85-240)||(52514235-52514391)
chr3 (69-160)||(19988587-19988678)
chr3 (107-240)||(21343486-21343620)
chr3 (66-160)||(28816952-28817046)
chr3 (70-211)||(34542129-34542271)
chr3 (82-206)||(40798231-40798356)
chr3 (66-189)||(19341045-19341166)
chr3 (66-219)||(40798918-40799069)
chr3 (66-160)||(10492055-10492150)
chr3 (66-240)||(19843355-19843521)
chr3 (66-159)||(11249476-11249568)
chr3 (70-142)||(11095042-11095114)
chr3 (70-208)||(12898645-12898784)
chr3 (65-152)||(21343418-21343505)
chr3 (70-208)||(27738584-27738722)
chr3 (80-138)||(11016781-11016839)
chr3 (110-222)||(55176343-55176456)
chr3 (66-142)||(11094157-11094232)
chr3 (89-208)||(16851102-16851222)
chr3 (69-160)||(34543089-34543181)
chr3 (70-223)||(26245296-26245450)
chr3 (65-160)||(27739519-27739612)
chr3 (67-152)||(8475888-8475976)
chr3 (1-46)||(2063076-2063121)
chr3 (66-152)||(4331768-4331857)
chr3 (67-142)||(16852016-16852090)
chr3 (69-238)||(51753526-51753697)
chr3 (1-49)||(14043060-14043108)
chr3 (102-138)||(19988509-19988545)
chr3 (69-116)||(21342914-21342961)
chr3 (67-152)||(40877758-40877836)
chr3 (65-142)||(4015050-4015130)
chr3 (118-206)||(6144301-6144390)
chr3 (67-116)||(14016687-14016736)
chr3 (102-159)||(40872100-40872157)
chr3 (66-106)||(6144282-6144322)
chr3 (66-106)||(10492857-10492897)
chr3 (133-220)||(11016845-11016933)
[»] chr1 (49 HSPs)
chr1 (66-240)||(27649200-27649375)
chr1 (69-240)||(39896513-39896685)
chr1 (66-171)||(46909529-46909634)
chr1 (67-222)||(9618683-9618839)
chr1 (66-238)||(35255251-35255424)
chr1 (66-240)||(49875290-49875465)
chr1 (66-208)||(50683803-50683946)
chr1 (71-238)||(26769112-26769280)
chr1 (67-183)||(28456454-28456571)
chr1 (66-142)||(37991625-37991701)
chr1 (68-171)||(23442288-23442391)
chr1 (69-171)||(7943865-7943967)
chr1 (66-168)||(51291537-51291639)
chr1 (67-160)||(4883261-4883354)
chr1 (133-240)||(15696752-15696860)
chr1 (70-209)||(37992505-37992645)
chr1 (70-208)||(30195342-30195481)
chr1 (66-208)||(49502080-49502223)
chr1 (66-142)||(18609196-18609272)
chr1 (70-209)||(49660801-49660941)
chr1 (77-189)||(28456683-28456796)
chr1 (146-240)||(641488-641583)
chr1 (70-160)||(585679-585768)
chr1 (66-152)||(51290355-51290441)
chr1 (77-209)||(18609069-18609202)
chr1 (67-160)||(30194449-30194541)
chr1 (67-160)||(47653660-47653752)
chr1 (66-160)||(19914494-19914587)
chr1 (66-160)||(21700797-21700891)
chr1 (66-128)||(45780886-45780948)
chr1 (69-142)||(44726413-44726486)
chr1 (65-160)||(586557-586650)
chr1 (110-240)||(45780177-45780307)
chr1 (67-142)||(47652740-47652815)
chr1 (133-219)||(49874972-49875059)
chr1 (66-123)||(30287762-30287819)
chr1 (67-116)||(49661711-49661760)
chr1 (133-240)||(45780927-45781035)
chr1 (70-133)||(43012659-43012722)
chr1 (70-129)||(50683259-50683318)
chr1 (69-128)||(51461833-51461892)
chr1 (66-128)||(6328844-6328906)
chr1 (66-116)||(43011840-43011890)
chr1 (107-240)||(49502814-49502948)
chr1 (66-123)||(641088-641145)
chr1 (97-161)||(35254566-35254630)
chr1 (65-128)||(15696710-15696773)
chr1 (116-152)||(17514726-17514762)
chr1 (66-106)||(26770537-26770577)
[»] scaffold0019 (1 HSPs)
scaffold0019 (66-248)||(134265-134448)
[»] chr4 (48 HSPs)
chr4 (66-248)||(46169152-46169335)
chr4 (67-206)||(32537493-32537633)
chr4 (67-240)||(1736043-1736217)
chr4 (66-219)||(40240324-40240478)
chr4 (66-240)||(36480491-36480666)
chr4 (67-205)||(40240662-40240801)
chr4 (70-189)||(40832641-40832761)
chr4 (70-208)||(14201485-14201624)
chr4 (66-160)||(46254399-46254493)
chr4 (66-213)||(9655860-9656008)
chr4 (133-240)||(53535936-53536044)
chr4 (66-240)||(28157525-28157700)
chr4 (67-142)||(29307447-29307522)
chr4 (66-139)||(37295279-37295352)
chr4 (66-142)||(51037419-51037495)
chr4 (66-240)||(28322071-28322246)
chr4 (69-160)||(40833564-40833655)
chr4 (70-160)||(50447036-50447127)
chr4 (96-221)||(12375951-12376077)
chr4 (66-152)||(36479829-36479915)
chr4 (67-160)||(14200589-14200681)
chr4 (66-128)||(21342752-21342814)
chr4 (67-152)||(1735405-1735490)
chr4 (66-127)||(11566778-11566839)
chr4 (67-183)||(35631167-35631283)
chr4 (65-160)||(38369134-38369227)
chr4 (70-208)||(23221626-23221764)
chr4 (70-160)||(38368256-38368345)
chr4 (70-127)||(7484787-7484844)
chr4 (70-152)||(9655227-9655309)
chr4 (66-152)||(21343328-21343414)
chr4 (66-128)||(40239658-40239720)
chr4 (66-116)||(40963666-40963716)
chr4 (66-128)||(46165776-46165838)
chr4 (67-132)||(28320555-28320620)
chr4 (1-116)||(53536035-53536148)
chr4 (65-160)||(23220706-23220799)
chr4 (70-142)||(29306573-29306645)
chr4 (74-152)||(16473636-16473717)
chr4 (90-208)||(46253462-46253581)
chr4 (66-208)||(55587334-55587476)
chr4 (66-116)||(7087924-7087974)
chr4 (66-128)||(40962985-40963047)
chr4 (133-222)||(46165707-46165797)
chr4 (66-142)||(7485614-7485688)
chr4 (66-138)||(28234492-28234567)
chr4 (71-116)||(51036549-51036594)
chr4 (66-106)||(42528917-42528957)
[»] chr7 (47 HSPs)
chr7 (1-239)||(45791253-45791491)
chr7 (66-222)||(30471495-30471651)
chr7 (66-248)||(29113063-29113246)
chr7 (66-248)||(29097811-29097994)
chr7 (69-238)||(35840077-35840247)
chr7 (66-189)||(49140651-49140775)
chr7 (66-149)||(12080487-12080570)
chr7 (66-160)||(42583011-42583105)
chr7 (66-171)||(30468467-30468572)
chr7 (70-189)||(28563656-28563776)
chr7 (70-208)||(42794172-42794311)
chr7 (70-208)||(46907515-46907654)
chr7 (66-160)||(7998-8092)
chr7 (66-160)||(26833425-26833519)
chr7 (66-143)||(38083839-38083916)
chr7 (70-142)||(12210545-12210617)
chr7 (66-189)||(47750522-47750646)
chr7 (67-142)||(27657941-27658016)
chr7 (70-208)||(42582091-42582230)
chr7 (70-208)||(49141576-49141715)
chr7 (70-160)||(7097-7187)
chr7 (67-239)||(19073529-19073701)
chr7 (120-240)||(39172968-39173089)
chr7 (66-142)||(32606814-32606890)
chr7 (66-128)||(5026595-5026657)
chr7 (66-128)||(12081173-12081235)
chr7 (66-123)||(26832843-26832900)
chr7 (133-240)||(26832751-26832859)
chr7 (70-142)||(38084715-38084787)
chr7 (109-240)||(48901436-48901568)
chr7 (66-116)||(25195317-25195367)
chr7 (66-116)||(46908450-46908500)
chr7 (102-189)||(48000216-48000304)
chr7 (107-171)||(12080435-12080503)
chr7 (127-241)||(29097143-29097258)
chr7 (133-209)||(5026539-5026616)
chr7 (67-189)||(7953719-7953835)
chr7 (67-128)||(31512363-31512424)
chr7 (70-238)||(48900806-48900975)
chr7 (133-208)||(25195250-25195326)
chr7 (90-205)||(46331975-46332091)
chr7 (110-240)||(29112320-29112451)
chr7 (130-219)||(35839354-35839444)
chr7 (66-107)||(12027423-12027464)
chr7 (69-125)||(34508628-34508684)
chr7 (108-207)||(38266097-38266197)
chr7 (80-116)||(39173095-39173131)
[»] scaffold0283 (1 HSPs)
scaffold0283 (1-207)||(510-707)
[»] chr5 (11 HSPs)
chr5 (69-240)||(8679507-8679679)
chr5 (66-222)||(8680197-8680354)
chr5 (66-152)||(20509502-20509588)
chr5 (70-208)||(3892395-3892534)
chr5 (66-160)||(3891511-3891604)
chr5 (69-142)||(41065930-41066003)
chr5 (67-123)||(35651569-35651625)
chr5 (67-116)||(42912202-42912251)
chr5 (200-238)||(13950518-13950556)
chr5 (200-236)||(18563406-18563442)
chr5 (66-118)||(41066542-41066594)
[»] chr6 (17 HSPs)
chr6 (66-189)||(15545725-15545849)
chr6 (70-184)||(2110410-2110525)
chr6 (1-238)||(15871737-15871966)
chr6 (66-240)||(455995-456170)
chr6 (70-208)||(13164215-13164354)
chr6 (66-142)||(2109588-2109664)
chr6 (66-142)||(6760823-6760899)
chr6 (66-137)||(7677896-7677967)
chr6 (66-206)||(17337629-17337773)
chr6 (66-151)||(32395946-32396034)
chr6 (70-189)||(32396809-32396929)
chr6 (66-141)||(25554752-25554826)
chr6 (66-133)||(32552539-32552606)
chr6 (66-116)||(117304-117354)
chr6 (67-116)||(8708021-8708070)
chr6 (192-240)||(24991279-24991327)
chr6 (70-128)||(6760049-6760107)
[»] scaffold0016 (2 HSPs)
scaffold0016 (66-152)||(69172-69258)
scaffold0016 (70-160)||(68406-68496)
[»] scaffold1644 (1 HSPs)
scaffold1644 (66-152)||(1147-1233)
[»] scaffold0504 (1 HSPs)
scaffold0504 (66-142)||(12454-12533)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29600949 - 29600707
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnn--tcaggtttgaggtttcttcggcagttaactaccg 98  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||                 |||||||||||||||| ||||||||||||| ||     
T  29600949 atgcataaaacgttgagaattgttgttgataatttatggtttttatcaaaaaataaaataaaataatcaggtttgaggtttcctcggcagttaactgcca 29600850  T
Q  99 aaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcatttt 197  Q
    || ||||||||||||||| ||||||||||| |||||||||||||  |||||||| |||||||  ||||||||| | ||||||||||||||||  ||||||    
T  29600849 aagttttcagttttcctcggtagtttactgccgaagttttcctcggtagttaactgcagccggttccataattcggcagttaactgtcgaggggcatttt 29600750  T
Q  198 agtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||||||||  ||||||||||||||| ||||||||| ||||    
T  29600749 agtaaattactggtgtgacacagccaatgcatatgtgtaaaca 29600707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 4015056 - 4015232
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactc 164  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||| |||  |||||||| |||||||| |     
T  4015056 tcaggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagtttttctcggtagttaactgcagccgattt 4015155  T
Q  165 cataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||||||| |||||||||||| ||| ||  |||||  |||||||||| ||||||||||||||| ||||||||||||||    
T  4015156 cataattcgacagttaactgccgatgagtattttgataaattactagtgtgacacagccaatgcatatgtgtcaaca 4015232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 43329061 - 43328886
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||||||| ||||||||||||||  ||||||| |||||||  |||    
T  43329061 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtaatttactgccgaagttttcctcaggagttaactgcagccggttcc 43328962  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | |||||||||  | |||  |||||  ||||||||||| ||||||||||||||| ||||||||||||||    
T  43328961 ataattcggcagttaactaccaaggggcatttcggtaaattactagtgtgacacagccaatgcatatgtgtcaaca 43328886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 38340808 - 38340978
Alignment:
Q  71 ttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataat 170  Q
    |||||||||| |||||||||||||  |||| |||||||||||| || ||||||||||| ||||||||| |||  |||||||| | |||||  ||||||||    
T  38340808 ttgaggtttcctcggcagttaactgtcgaagttttcagttttcttcggtagtttactgccgaagtttttctcggtagttaactgtagccggttccataat 38340907  T
Q  171 t-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    | | ||||||||||||||||  |||||   |||||||||| || |||||||||||||||||||||||||||    
T  38340908 tcggcagttaactgtcgagggacatttcgataaattactagtgcgacacagccaatacatatgtgtcaaca 38340978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 248
Target Start/End: Original strand, 33416916 - 33417055
Alignment:
Q  110 tttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    ||||||| ||||||||||| ||||||| |||||  |||||||| |||||||| ||||||||| | ||||||||||  ||||   ||||||||||||||||    
T  33416916 tttcctcggtagtttactgccgaagttatcctcggtagttaactgcagccgattccataattcggcagttaactgctgaggggtattttagtaaattact 33417015  T
Q  209 aatgtgacacagccaatacatatgtgtcaacatcgattct 248  Q
    | ||||||||||||||| |||||||| ||||||| |||||    
T  33417016 agtgtgacacagccaatgcatatgtgccaacatcaattct 33417055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 43329257 - 43329411
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||| ||||| ||| ||||||||| ||||| |||||||||||||||  |||||||||| ||||||||||||| ||||||||| ||| |||| |||    
T  43329257 caggtttgaagtttcctcgacagttaactgccgaagttttcagttttcctcgatagtttactgccgaagttttcctcgatagttaactgcaaccgattcc 43329356  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacaca 219  Q
    |||||| | |||||||||  ||| ||  ||||   ||||||||||||||||||||    
T  43329357 ataattcggcagttaactaccgaagaatatttcgataaattactaatgtgacaca 43329411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 66 - 182
Target Start/End: Original strand, 7780288 - 7780405
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||| || |||||||||||||||||||||||||  |||||||| |||| ||  |||    
T  7780288 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcttctgtagtttactgtcgaagttttcctcggtagttaactgcagtcggttcc 7780387  T
Q  166 ataatt-gacagttaact 182  Q
    ||| || |||||||||||    
T  7780388 atagttcgacagttaact 7780405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 40969593 - 40969767
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactc 164  Q
    |||||||||||||||| |||  |||||||| ||||| |||||||||||| ||  |||||||  | ||||||||||||||||| ||||| |||||||  ||    
T  40969593 tcaggtttgaggtttcctcgatagttaactgccgaagttttcagttttcttctatagtttatggccgaagttttcctcaatacttaactgcagccggttc 40969692  T
Q  165 cataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||||||| ||||||||||||  || || ||||||  |||||||||  ||||||| ||| ||| ||||||||||||||    
T  40969693 cataattggacagttaactgctgaagaacattttgataaattact--tgtgacatagctaatgcatatgtgtcaaca 40969767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 12252242 - 12252097
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaag-ttttcctcaatagttaaccgcagccgactc 164  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||| |||||||  |||||||||| | ||| ||||||||  |||||||| |||||||  ||    
T  12252242 caggtttgaggtttcctcggcagttaactgccgaagttttcagatttcctcgatagtttactgccaaagtttttcctcggtagttaactgcagccggttc 12252143  T
Q  165 cataatt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    ||||||| | |||||||||| |||||| |||||  |||||||||||    
T  12252142 cataattcggcagttaactgccgaggagcatttaggtaaattacta 12252097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 30802970 - 30803063
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||||| || |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||   ||||||| |||||||    
T  30802970 aggtttgaggtttcctctgcagttaactgccgaagttttcagttttcctcggtagtttactgtcgaagttttcctcggcagttaactgcagccg 30803063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 30802158 - 30802018
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  30802158 tttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 30802059  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    || | |||||||||| |||||  |||||  |||||||||||    
T  30802058 ttcggcagttaactgccgaggggcatttgggtaaattacta 30802018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 6233530 - 6233673
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| ||||||||||||| | ||| |||| |||||||||| |||||||| || |||||||||||||  |||||||| |||||||| ||||    
T  6233530 aggtttgaggtttcctcggcagttaactgctgaagtttttagttttcctcggtagtttattgccgaagttttcctcggtagttaactgcagccgattcca 6233629  T
Q  167 t-aattgacagttaactgtcgaggatcattttagtaaattacta 209  Q
    | ||| || ||||||||| ||| |  |||||  |||||||||||    
T  6233630 taaatcgatagttaactgccgaaggacatttgggtaaattacta 6233673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 10424960 - 10424885
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  10424960 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctc 10424885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 29905580 - 29905405
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| || || ||||||||||||||| ||||||||||  |||||||||||||  || ||||| |||| ||  | |    
T  29905580 caggtttgaggtttcctcggcagttaactgccaaagttttcagttttcctcggtagtttactaccgaagttttcctcggtaattaactgcagtcggtttc 29905481  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| |||| ||||||| ||||||  ||||   |||||||||  |||  | |||||||| ||||||||||||||    
T  29905480 ataattcgacaattaactgccgaggaagatttggataaattactcgtgtttctcagccaatgcatatgtgtcaaca 29905405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 29947889 - 29947812
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctca 143  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  29947889 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagttaactgccgaagttttcctca 29947812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 28420109 - 28420185
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||    
T  28420109 caggtttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctc 28420185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 39489305 - 39489214
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcag 157  Q
    ||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||||| | ||||||| ||||    
T  39489305 caggtttaaggtttcctcggcagttaactgccgaagttttcagtttttctcggtagtttactgccgaagttttcctcgacagttaactgcag 39489214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 4014385 - 4014295
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcag 157  Q
    ||||||| |||||| ||||||||||||| ||||| ||||||||||||||| |||| |||||| |||||||||||||  |||||||| ||||    
T  4014385 aggtttgtggtttcctcggcagttaactgccgaagttttcagttttcctcggtagcttactgccgaagttttcctcggtagttaactgcag 4014295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 10425774 - 10425864
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| ||||||||| ||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  10425774 tttgaggtttcctcggcagttgactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 10425864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 36510807 - 36510901
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| |||| || |||||||||||||   ||||||| |||||||    
T  36510807 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtaatttattgccgaagttttcctcggcagttaactgcagccg 36510901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 29948719 - 29948792
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||    
T  29948719 gtttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctc 29948792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 39462500 - 39462676
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||| ||||||||| ||||||||||||| |  |||||||||||||||||| ||||||||||| | ||||||||||    |||||||  ||| ||  ||||    
T  39462500 aggtatgaggtttcctcggcagttaactgcataaattttcagttttcctcggtagtttactgccaaagttttccttgggagttaactacagacggttcca 39462599  T
Q  167 taa-ttgacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaacatc 242  Q
    ||| ||||||||||||||  ||||| |||||   |||||||||  |||  | ||||||||  |||||||||||||||    
T  39462600 taatttgacagttaactgatgaggagcatttggataaattactcgtgtttctcagccaatggatatgtgtcaacatc 39462676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 28420179 - 28420312
Alignment:
Q  77 tttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gaca 175  Q
    |||| |||||||||||||   ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | ||||||| | ||    
T  28420179 tttcctcggcagttaactgtagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataattcggca 28420278  T
Q  176 gttaactgtcgaggatcattttagtaaattacta 209  Q
    |||||||||| |||  |||||  |||||||||||    
T  28420279 gttaactgtcaaggggcatttgggtaaattacta 28420312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 9089386 - 9089489
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    ||||||||| |||| || ||| |||||| ||||| |||||||||||||||  |||||||||| ||||||||||||| ||| |||||  ||||||| ||||    
T  9089386 aggtttgag-tttcctcagcaattaactgccgaagttttcagttttcctcgatagtttactgccgaagttttcctcgataattaactacagccgattcca 9089484  T
Q  167 taatt 171  Q
    |||||    
T  9089485 taatt 9089489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 9088811 - 9088716
Alignment:
Q  89 ttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactg 183  Q
    |||||| ||||| ||||||||||| ||| ||||||||||| |||| ||||||||  |||||||| |||||||  ||||||||| ||||||||||||    
T  9088811 ttaactgccgaagttttcagtttttctcggtagtttactgccgaaattttcctcggtagttaactgcagccggttccataattcgacagttaactg 9088716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 2529359 - 2529444
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||||||||  |||| |||||||| ||||| |||| |||||| |||  |||||||||| ||||||||||||| |||||||||    
T  2529359 aggtttgaggtttgctcggtagttaactgccgaagtttttagtttttctcgatagtttactgccgaagttttcctcgatagttaac 2529444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 33002077 - 33002018
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||| |||||| ||||    
T  33002077 gtttgtggtttcctcggcagttaactgccgaaattttcagttttcctcggtagttaactg 33002018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 39186145 - 39186074
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagtttt 138  Q
    ||||||||||||||||||||| |||||| ||||| |||| |||||| ||| ||||||||||| | |||||||    
T  39186145 aggtttgaggtttcttcggcatttaactgccgaagtttttagtttttctcggtagtttactgccaaagtttt 39186074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 40156524 - 40156427
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| |||||   ||| |||||| | |||| ||||||||||||||||||   ||||||| |||||||    
T  40156524 caggtttgaggtttcctcggcagttaactgccgaagttttcagtagtattcctcggcagttaactgtcgaagttttcctcgtcagttaactgcagccg 40156427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 2528765 - 2528715
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  2528765 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 2528715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 33002289 - 33002343
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtt 123  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||    
T  33002289 gtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtt 33002343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 135
Target Start/End: Complemental strand, 37321286 - 37321220
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagt 135  Q
    |||||||||||| |||||| |||||| ||||| |||||||||||| || ||||||||||| ||||||    
T  37321286 gtttgaggtttcctcggcaattaactgccgaagttttcagttttcttcggtagtttactgccgaagt 37321220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 39211539 - 39211601
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  39211539 caggtttgaggtttcctcgacagttaactgccgaagttttcagttttcctcggtagttaactg 39211601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 41273196 - 41273275
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaatttt---cagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| ||||| ||||    ||| ||||||||||||||||||  ||||||||||||    
T  41273196 caggtttgaggtttcctcggcagttaactgccgaattttttagtagtattcctcagtagtttactgcagaagttttcctc 41273275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 39489953 - 39490041
Alignment:
Q  102 ttttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataattga-cagttaactgtcgagg 189  Q
    ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | ||||||| | |||||||||| |||||    
T  39489953 ttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataattcagcagttaactgccgagg 39490041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 240
Target Start/End: Complemental strand, 2270946 - 2270835
Alignment:
Q  130 cgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaataca 228  Q
    |||||||||| ||  || ||||| ||||||   ||||||||| | |||||||||| ||||||  ||||  ||||||||||| ||||||||| ||||| ||    
T  2270946 cgaagttttcatcggtaattaactgcagccagttccataattcggcagttaactgccgaggagtatttcggtaaattactagtgtgacacaaccaatgca 2270847  T
Q  229 tatgtgtcaaca 240  Q
    ||||||||||||    
T  2270846 tatgtgtcaaca 2270835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 7779734 - 7779675
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    |||||||||||  ||| ||||||||| ||||||||||||||||||||| |||||| ||||    
T  7779734 gtttgaggttttctcgacagttaactgccgaaattttcagttttcctcggtagttaactg 7779675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 36510028 - 36509969
Alignment:
Q  70 tttgaggtttcttc-ggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||| || ||||||||||| ||||| ||||||||||||||| |||||||||||    
T  36510028 tttgaggtttcctctggcagttaactgccgaagttttcagttttcctcggtagtttactg 36509969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 33416845 - 33416894
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaac 50  Q
    ||||||||||| |||| ||||| ||||||||||||||| |||||||||||    
T  33416845 atgcataaaacgttgagaattgatgttgataatttatgatttttatcaac 33416894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 38779635 - 38779718
Alignment:
Q  107 agttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgagg 189  Q
    |||||||||| |||||||||||  ||||||||||||   ||||||| |||||||  ||||||||| | |||||||||| |||||    
T  38779635 agttttcctcggtagtttactgcagaagttttcctcgggagttaactgcagccggttccataattcggcagttaactgccgagg 38779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 39461970 - 39461917
Alignment:
Q  66 caggtttgaggtttcttcggcag---ttaactaccgaaattttcagttttcctc 116  Q
    |||||||||||||||||||||||   |||||| ||||| |||||||||||||||    
T  39461970 caggtttgaggtttcttcggcagcagttaactgccgaagttttcagttttcctc 39461917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 2528724 - 2528634
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagcc 222  Q
    |||||||||| ||||||||| |||||||  ||||||||| | |||||||||| ||| |  ||||   ||||||||||| ||||||||||||    
T  2528724 agttttcctcgatagttaactgcagccggttccataattcggcagttaactgccgaagggcattgcggtaaattactagtgtgacacagcc 2528634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 15488127 - 15488185
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||| ||| ||||||||| ||||| |||||||||||| || |||||| ||||    
T  15488127 tttgaggtttcatcgacagttaactgccgaagttttcagttttcatcggtagttaactg 15488185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 39033176 - 39033114
Alignment:
Q  77 tttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttc 139  Q
    |||| ||||||||||||| ||||| |||||||||||  || ||| ||||||| ||||||||||    
T  39033176 tttcctcggcagttaactgccgaagttttcagttttaatcggtaatttactgccgaagttttc 39033114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 106
Target Start/End: Original strand, 43982190 - 43982219
Alignment:
Q  77 tttcttcggcagttaactaccgaaattttc 106  Q
    ||||||||||||||||||||||||||||||    
T  43982190 tttcttcggcagttaactaccgaaattttc 43982219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 236
Target Start/End: Complemental strand, 33002039 - 33001935
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatat 231  Q
    ||||||||||  |||||||| |||||||  ||||||||| |||||||||||| | |||  |||||  ||||||||||  |||  | |||||||| |||||    
T  33002039 agttttcctcggtagttaactgcagccggttccataattcgacagttaactgccaaggtgcatttgggtaaattactcgtgtttctcagccaatgcatat 33001940  T
Q  232 gtgtc 236  Q
    |||||    
T  33001939 gtgtc 33001935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 239
Target Start/End: Complemental strand, 35935266 - 35935162
Alignment:
Q  136 tttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtg 234  Q
    |||||||  |||||||| |||||||| ||||||||| | |||||||||| ||| |  |||||  ||||||||||  |||  | |||||||| ||||||||    
T  35935266 tttcctcggtagttaactgcagccgattccataattcggcagttaactgccgaagggcatttgggtaaattacttgtgtctctcagccaatgcatatgtg 35935167  T
Q  235 tcaac 239  Q
    |||||    
T  35935166 tcaac 35935162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 39210973 - 39210925
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttc 113  Q
    |||| ||||||||||  ||||||||||||| ||||| ||||||||||||    
T  39210973 tcagatttgaggtttactcggcagttaactgccgaagttttcagttttc 39210925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 43520024 - 43519848
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| || ||||||||||  |||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||  |||    
T  43520024 caggtttgaggtttcctctgcagttaactgtcgaaattttcagttttcctcggtagtttactgccgaagttttcctcgatagttaactgcagccggttcc 43519925  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattac-taatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | ||||||||||||||||  |||||| ||||||||| || ||||||||||||||| ||||||||||||||    
T  43519924 ataattcggcagttaactgtcgaggggcattttggtaaattacttagtgtgacacagccaatgcatatgtgtcaaca 43519848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 31745877 - 31746115
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||               |||||||||||||||| ||||||||||||| |||||    
T  31745877 atgcataaaacgttgagaattgttgttgataatttatggtttttatcaa--aaaaaaaataaaatcaggtttgaggtttcctcggcagttaactgccgaa 31745974  T
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttag 199  Q
     ||||||||||||||  ||||||||||| |||||||||||||  |||||||| |||||||| ||||||||| | |||||||||| ||| |  ||||||||    
T  31745975 gttttcagttttccttggtagtttactgccgaagttttcctcggtagttaactgcagccgattccataattcggcagttaactgccgaaggacattttag 31746074  T
Q  200 taaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||||||  |||||||||||| || ||||||||| ||||    
T  31746075 taaattactggtgtgacacagccgatgcatatgtgtaaaca 31746115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42732672 - 42732905
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| || | |||||||||||||||||||||||||||||||||              |||||||||||||| | |||||||||| ||  ||||    
T  42732672 atgcataaaacgtttagaattgttgttgataatttatggtttttatcaacaaaaaaaa------tcaggtttgaggttccatcggcagttagctgtcgaa 42732765  T
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataattgacagttaactgtcgaggatcattttagt 200  Q
    |||||||||||| ||| |||||||| || | ||||||||||| ||||||||| |||||||  |||||||||| |||||||||| |||| | ||||||| |    
T  42732766 attttcagtttttctcggtagtttattgccaaagttttcctcgatagttaactgcagccggttccataattggcagttaactgccgagaaccattttaat 42732865  T
Q  201 aaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| || ||||||||| |||||  |||||||||||||    
T  42732866 aaattattagtgtgacacaaccaatggatatgtgtcaaca 42732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 25994568 - 25994393
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||||||| |||||||||||||| |||||||| |||||||  |||    
T  25994568 caggtttgaggtttcctcggcagttaactgccgaagttttcagtttttctcggtagtttactgccgaagttttcctcagtagttaactgcagccggttcc 25994469  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | ||||||||||||||||  |||||  ||||||||    |||  | |||||||| ||||||||||||||    
T  25994468 ataattcggcagttaactgtcgaggggcatttgggtaaattatccgtgtttctcagccaatgcatatgtgtcaaca 25994393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 36345125 - 36344981
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| |||||| |||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||  |||    
T  36345125 caggtttgaggtttcctcggcaattaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcagtagttaactgcagccggttcc 36345026  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    |||||| | |||||||||| |||||  |||||  |||||||||||    
T  36345025 ataattcggcagttaactgccgaggggcatttgggtaaattacta 36344981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 44886694 - 44886891
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||               |||||||||||||||| ||||||||||||| |||||    
T  44886694 atgcataaaacgttgagaattgttgttgataatttatgatttttatcaa--------aaaaaaatcaggtttgaggtttcctcggcagttaactgccgaa 44886785  T
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttag 199  Q
     ||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||||||| | |||||||||| |||    ||||||||    
T  44886786 gttttcagcttttctcagtagtttactgccgaagtttttctcgatagttaactgcagccgattccataattcggcagttaactgccga--tacattttag 44886883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 3695489 - 3695314
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||| ||||| ||||||||||||| ||||| ||||||||||||||  ||||||||||  |||||||||||||  |||||||| |||||||  |||    
T  3695489 caggtttgaagtttcctcggcagttaactgccgaagttttcagttttccttggtagtttactaccgaagttttcctcggtagttaactgcagccggttcc 3695390  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | |||||||||| |||||  |||||   |||||||||  |||  | |||||||| ||||||||||||||    
T  3695389 ataattcggcagttaactgccgaggggcatttggataaattactcgtgtttctcagccaatgcatatgtgtcaaca 3695314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 27502523 - 27502662
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  27502523 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 27502622  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || |||||||||||| |||||  ||||| ||||| |||||    
T  27502623 ttcgacagttaactgccgaggggcatttgagtaatttact 27502662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 38133292 - 38133168
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| || |||||||||| ||||| ||||||||||||||| | ||||||||| | |||||||||||| |||||||| |||||||  |||    
T  38133292 caggtttgaggtttcatcagcagttaactgccgaagttttcagttttcctcgggagtttactgccaaagttttcctcagtagttaactgcagccggttcc 38133193  T
Q  166 ataatt-gacagttaactgtcgagg 189  Q
    |||||| | |||||||||| |||||    
T  38133192 ataattcggcagttaactgccgagg 38133168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 38604199 - 38604293
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  38604199 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 38604293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 30025133 - 30025009
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||| ||||||||| || || |||||||||||| || ||||||||||| |||||||||||||  ||||||||  ||||||  |||    
T  30025133 caggtttgaggtttcctcgacagttaactgccaaagttttcagttttcttcggtagtttactgccgaagttttcctcggtagttaactacagccggttcc 30025034  T
Q  166 ataa-ttgacagttaactgtcgagg 189  Q
    |||| |||||||||||||| |||||    
T  30025033 ataatttgacagttaactgccgagg 30025009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 21248294 - 21248176
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| |||||| |||||| | | | |||||||||||| |||||||||||||| ||||||||||||| ||| ||||| |||||||  |||    
T  21248294 caggtttgaggtttcctcggcatttaactgctgtagttttcagttttcatcagtagtttactgccgaagttttcctcgataattaactgcagccggttcc 21248195  T
Q  166 ataatt-gacagttaactg 183  Q
    |||||| | ||||||||||    
T  21248194 ataattcgccagttaactg 21248176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 43363211 - 43363305
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| || || |||||||||||||||  |||||||||| |||||||||||||  |||||||| |||||||    
T  43363211 caggtttgaggtttcctcggcagttaactgccaaagttttcagttttcctcgatagtttactgccgaagttttcctcggtagttaactgcagccg 43363305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 2712524 - 2712380
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    |||| |||||||||| ||||||||||||| ||||||||| ||||||||||| | |||| |||| |||| ||||||||  |||||||| |||||||  |||    
T  2712524 caggcttgaggtttcctcggcagttaactgccgaaatttccagttttcctcggcagttaactgccgaaattttcctcggtagttaactgcagccggttcc 2712425  T
Q  166 ataattga-cagttaactgtcgaggatcattttagtaaattacta 209  Q
    |||||| | || ||||||| |||||| |||||   ||||||||||    
T  2712424 ataattcagcaattaactgccgaggagcatttggataaattacta 2712380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 38603428 - 38603289
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||  ||||||||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||| | ||||||| |||| ||  | |||||    
T  38603428 tttgaggtttgctcggcagttaactgccgaagtttttagttttcctcggtagtttactgccaaagttttcctcgacagttaactgcagtcggtttcataa 38603329  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| |||||| ||||| ||||| |||||    
T  38603328 ttcggcagttaactgccgaggaacatttaagtaatttact 38603289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 27501719 - 27501628
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||| ||| |||||| || ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  27501719 gtttgaggtttcctcgacagttatctgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 27501628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 31185430 - 31185505
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||| ||||||||||||| | ||| ||||||||||||||| |||||| |||| |||||||||||||    
T  31185430 aggtttgaggtttcctcggcagttaactgctgaagttttcagttttcctcggtagttaactgccgaagttttcctc 31185505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 2335103 - 2335193
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| || |||||||||| ||||| ||||||||||||||| ||||||||||  |||||||||||||   ||||||| |||||||    
T  2335103 tttgaggtttcctccgcagttaactgccgaagttttcagttttcctcggtagtttactaccgaagttttcctcggcagttaactgcagccg 2335193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 44933981 - 44933887
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||| ||||||||| ||||| |||||||| |||||| |||||||||||  ||||||||||||   ||||||| |||||||    
T  44933981 caggtttgaggtttcctcgacagttaactgccgaatttttcagtattcctcggtagtttactgcggaagttttcctcggcagttaactgcagccg 44933887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 30026212 - 30026273
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| ||||    
T  30026212 aggtttgaggtttcctcggcagttaactaccgaagttttcagttttcctcggtagttaactg 30026273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 28617689 - 28617596
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||   |||||||| |||||||||||||||||||||||||   ||||||| |||||||    
T  28617689 tcaggtttgagatttcctcggcagttaactgccgaagttttt--ttttcctcggtagtttactgtcgaagttttcctcggcagttaactgcagccg 28617596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 171
Target Start/End: Original strand, 41859152 - 41859256
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| ||||||||||||| ||||| ||||| |||||||||  |||||||||   |||||||| |||| |||||||| |||| ||  ||||    
T  41859152 aggtttgaggtttcctcggcagttaactgccgaagttttctgttttcctcgatagtttacttctgaagtttttctcagtagttaactgcagtcggttcca 41859251  T
Q  167 taatt 171  Q
    |||||    
T  41859252 taatt 41859256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 43362429 - 43362357
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||| ||||||||||||  ||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  43362429 tttgaggtttcctcggcagttaaccgccgaagttttcagttttccttggtagtttactgccgaagttttcctc 43362357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 914834 - 914696
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||| ||||||| ||||||||||  |||||||||||||   ||||||| |||||||  | |||||    
T  914834 tttgaggtttcctcggcagttaactgccgaagttttcag-tttcctcggtagtttactaccgaagttttcctcggcagttaactgcagccggtttcataa 914736  T
Q  170 -ttgacagttaactgtcgaggatcattttagtaaattact 208  Q
     ||| |||||||||| ||| |  |||||  ||||||||||    
T  914735 tttggcagttaactgccgaagggcatttgggtaaattact 914696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 32584170 - 32584080
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||| ||||||||||||| ||||| ||| ||||||||||| | ||||||||| |||||||||||||   ||||||| |||||||    
T  32584170 gtttgaggtttcctcggcagttaactgccgaagttt-cagttttcctcggaagtttactgccgaagttttcctcggcagttaactgcagccg 32584080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 158
Target Start/End: Original strand, 40745236 - 40745327
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagc 158  Q
    |||||||||||||| ||||||||||||| ||||| |||| |||||| ||| ||||||||||  ||||||||||||   |||||||| |||||    
T  40745236 aggtttgaggtttcctcggcagttaactgccgaagtttttagtttttctcggtagtttactaccgaagttttccttggtagttaactgcagc 40745327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 915621 - 915705
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||   |||||||| ||||||||||| ||||||||||||| | |||||||    
T  915621 tcaggtttgagatttcctcggcagttaactgccgaagtttt---ttttcctcggtagtttactgccgaagttttcctcgacagttaac 915705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 28618395 - 28618466
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||| ||||||||||||| ||||| ||||||| ||||||| ||||||||||  |||||||||||||    
T  28618395 tttgaggtttcctcggcagttaactgccgaagttttcag-tttcctcggtagtttactaccgaagttttcctc 28618466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 45252128 - 45251980
Alignment:
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaacc--------gcagccgactccataatt-gacagttaactgtcgaggat 191  Q
    ||||||| |||||||| ||||||||||| |||||||||||||   |||||||         |||||||  ||||||||| | |||||||||| ||| ||     
T  45252128 attttcaattttcctcggtagtttactgccgaagttttcctcgggagttaacttcaggtctgcagccggttccataattcggcagttaactgccgatgaa 45252029  T
Q  192 cattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||||||  |||||||||| |||||||||| |||| ||||||||||||||    
T  45252028 cattttgataaattactagtgtgacacagtcaatgcatatgtgtcaaca 45251980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 41858618 - 41858568
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  41858618 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 41858568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 240
Target Start/End: Original strand, 4529234 - 4529355
Alignment:
Q  120 agtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacac 218  Q
    |||| |||| |||||||||| ||  |||||||| ||| || | ||||||||| | |||||||||  ||| || ||||| | |||||||||| ||||||||    
T  4529234 agttaactgccgaagttttcttcggtagttaactgcaaccaattccataattcggcagttaactaccgaagaacatttcaataaattactagtgtgacac 4529333  T
Q  219 agccaatacatatgtgtcaaca 240  Q
    |  |||||||||||||||||||    
T  4529334 aatcaatacatatgtgtcaaca 4529355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 45252552 - 45252656
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||| | ||||||||||||| ||||| ||| |||||||||||  || ||||||| |||||||||  || ||||||||| ||| |||| ||     
T  45252552 caggtttgaggttacctcggcagttaactgccgaagttt-cagttttcctcgataatttactgccgaagtttttttcgatagttaactgcaaccgattct 45252650  T
Q  166 ataatt 171  Q
    ||||||    
T  45252651 ataatt 45252656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 5532979 - 5533070
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| ||||   |||  ||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  5532979 caggtttgaggtttcctcggcagttaactgccgaagtttt---tttctctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 5533070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 22960739 - 22960680
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    |||||||||||  ||||||||||| | ||||| |||||||||||||||||||||| ||||    
T  22960739 gtttgaggttttctcggcagttaattgccgaagttttcagttttcctcagtagttaactg 22960680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 32584974 - 32585020
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  32584974 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 32585020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 35646027 - 35645922
Alignment:
Q  82 tcggcagttaactaccgaaattttcagtt---ttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagt 177  Q
    ||||||||||||| ||||| ||||||||    |||||| |||||||| || |||||||||||||  |||||||| ||| |||  ||||||||| | ||||    
T  35646027 tcggcagttaactgccgaagttttcagtagtattcctcggtagtttagtgacgaagttttcctcggtagttaactgcatccgtttccataattcggcagt 35645928  T
Q  178 taactg 183  Q
    ||||||    
T  35645927 taactg 35645922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 34798788 - 34798850
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||| ||||| ||| ||||||||| | ||| ||||||||||||||| |||||| ||||    
T  34798788 caggtttgaagtttcctcgacagttaactgctgaagttttcagttttcctcggtagttaactg 34798850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 106
Target Start/End: Complemental strand, 486132 - 486103
Alignment:
Q  77 tttcttcggcagttaactaccgaaattttc 106  Q
    ||||||||||||||||||||||||||||||    
T  486132 tttcttcggcagttaactaccgaaattttc 486103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 10749622 - 10749701
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||| ||||||  ||||||||||||| ||||| |||||   ||| |||||| |||||||||||  ||||||||||||    
T  10749622 caggtttcaggttttctcggcagttaactgccgaagttttcagtagtattcctcggtagtttactgcagaagttttcctc 10749701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 46)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 65 - 248
Target Start/End: Complemental strand, 42148415 - 42148231
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactc 164  Q
    |||||||| ||||||| ||||||||||||| ||||| ||||||||||| ||  |||||||||| |||||||||||||| ||||||||| |||||||  ||    
T  42148415 tcaggtttcaggtttcctcggcagttaactgccgaagttttcagttttacttggtagtttactttcgaagttttcctcgatagttaactgcagccggttc 42148316  T
Q  165 cataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaacatcgattct 248  Q
    ||||||| | |||||||||| ||||||  ||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||    
T  42148315 cataattcggcagttaactgccgaggaatattttagtaaattgctagtgtgacacagccaatgcatatgtgtcaacaacgattct 42148231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 2063157 - 2063333
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactc 164  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||  |||||||| |||||    ||    
T  2063157 tcaggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgtcgaagttttcctcggtagttaactgcagctagttc 2063256  T
Q  165 cataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||||||| | ||| |||||| |||||  |||||||||||||||||  |||||||| |||||| ||||||||| ||||    
T  2063257 cataattcggcaggtaactgccgagggacattttagtaaattactggtgtgacacggccaatgcatatgtgtaaaca 2063333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 67 - 209
Target Start/End: Complemental strand, 14043041 - 14042898
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| ||  ||||    
T  14043041 aggtttgaggtttgctcggcagttaactgccgaaattttcagttttcctcagtagtttactgccgaagttttcctcgatagttaactgcagtcggttcca 14042942  T
Q  167 taattga-cagttaactgtcgaggatcattttagtaaattacta 209  Q
    ||||| | || ||||| |  ||||  ||||||||||||||||||    
T  14042941 taattcagcaattaacagctgaggggcattttagtaaattacta 14042898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 31977778 - 31977603
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| |  |||||||||| ||||| ||||||||||||||| ||||||||||  ||||||||||||| |||||||||  || |||  |||    
T  31977778 caggtttgaggtttcctttgcagttaactgccgaagttttcagttttcctcggtagtttactaccgaagttttcctcgatagttaactacaaccgcttcc 31977679  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| |||||||||||| ||| || |||||  ||||||||||  |||  | |||||||||||||||||||||||    
T  31977678 ataattcgacagttaactgccgatgagcatttgggtaaattactcgtgtttctcagccaatacatatgtgtcaaca 31977603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 67 - 209
Target Start/End: Original strand, 32744104 - 32744247
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||  |||||||| |||||||  ||||    
T  32744104 aggtttgaggtttcctcggcagttaactaccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggtagttaactgcagccggttcca 32744203  T
Q  167 taatt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    ||||| | |||||||||  |||||  |||||  |||||||||||    
T  32744204 taattcggcagttaactaccgaggggcatttgggtaaattacta 32744247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 55175781 - 55175676
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| |||||| |||||||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||    
T  55175781 caggtttgaggtttcctcggcagttaactgccgaagttttcaattttcctcggtagtttactgccgaagttttcctcgatagttaactgcagccgattcc 55175682  T
Q  166 ataatt 171  Q
    ||||||    
T  55175681 ataatt 55175676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 11248672 - 11248545
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  11248672 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 11248573  T
Q  170 tt-gacagttaactgtcgaggatcattt 196  Q
    || |||||||||||| |||||| |||||    
T  11248572 ttcgacagttaactgccgaggagcattt 11248545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 11269426 - 11269286
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||| ||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  |||||||    
T  11269426 tttgatgtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggttccataa 11269327  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    || ||||| |||||| |||||  |||||| |||||||||||    
T  11269326 ttcgacaggtaactgccgaggggcattttggtaaattacta 11269286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 240
Target Start/End: Complemental strand, 52514391 - 52514235
Alignment:
Q  85 gcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactg 183  Q
    |||||||||| ||||| |||||||||||| |  ||||||||||| ||||||||||||| ||||||||| |||||||  ||||||||| | ||||||| ||    
T  52514391 gcagttaactgccgaagttttcagttttcgttcgtagtttactgccgaagttttcctcgatagttaactgcagccggttccataattcggcagttaattg 52514292  T
Q  184 tcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
     |||||   |||| |||||||||||  |||  | |||||||||||||||||||||||    
T  52514291 ccgaggggtatttgagtaaattactcgtgtttctcagccaatacatatgtgtcaaca 52514235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 19988587 - 19988678
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||  ||||||| |||||||    
T  19988587 gtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcagcagttaactgcagccg 19988678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 21343486 - 21343620
Alignment:
Q  107 agttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaatt 205  Q
    |||||||||| |||||| |||| |||||||||||||  |||||||| |||||||  ||||||||| | |||||||||||||| |  |||||  |||||||    
T  21343486 agttttcctcggtagttaactgccgaagttttcctcggtagttaactgcagccggttccataattcggcagttaactgtcgaaggacatttcggtaaatt 21343585  T
Q  206 actaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||| |||||||||| |||| ||||||||||||||    
T  21343586 actagtgtgacacagtcaatgcatatgtgtcaaca 21343620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 28816952 - 28817046
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  28816952 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 28817046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 34542271 - 34542129
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||| |||| ||||||||   ||||||| |||||||  | |||||    
T  34542271 tttgaggtttcctcggcagttaactgcagaaattttcagttttcctcggtagtttactgccgaacttttcctcggcagttaactgcagccggtttcataa 34542172  T
Q  170 ttga-cagttaactgtcgaggatcattttagtaaattactaat 211  Q
    || | |||||||||| ||| || |||||  |||||||||||||    
T  34542171 ttcagcagttaactgccgaagaacatttaggtaaattactaat 34542129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 206
Target Start/End: Complemental strand, 40798356 - 40798231
Alignment:
Q  82 tcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaa 180  Q
    |||||| |||||| ||||| ||||||||||||||| ||| ||||||| ||||||||||||| | ||||||| |||||||| ||||||||| |||||||||    
T  40798356 tcggcaattaactgccgaagttttcagttttcctcggtaatttactgccgaagttttcctcgacagttaactgcagccgattccataattcgacagttaa 40798257  T
Q  181 ctgtcgaggatcattttagtaaatta 206  Q
    ||| ||| || ||||| | |||||||    
T  40798256 ctgccgatgaacatttgaataaatta 40798231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 19341166 - 19341045
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||| ||||| ||||||||||||| ||||| ||| ||||||||||| | |||| ||||||||||||||||||  |||||||| |||||||  |||    
T  19341166 caggtttgatgtttcctcggcagttaactgccgaagtttccagttttcctcggcagttaactgtcgaagttttcctcggtagttaactgcagccggttcc 19341067  T
Q  166 ataattgacagttaactgtcgagg 189  Q
    ||||||  | ||||||||||||||    
T  19341066 ataatt--cggttaactgtcgagg 19341045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 40798918 - 40799069
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||   || ||||| ||||||||||||||| |||||||| || |||||||||||||  |||||||| |||||||  |||    
T  40798918 caggtttgaggtttcctcggcagt---ctgccgaagttttcagttttcctcggtagtttattgccgaagttttcctcggtagttaactgcagccggttcc 40799014  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacaca 219  Q
    |||||| | |||||||||| |||||   ||||  |||||||||| ||||||||||    
T  40799015 ataattcggcagttaactgccgaggggtatttcggtaaattactcatgtgacaca 40799069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 10492150 - 10492055
Alignment:
Q  66 caggtttgaggtttc-ttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| |||||||||||| | ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  10492150 caggtttgaggtttccttcggcagttaagtgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcgtcagttaactgcagccg 10492055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 19843355 - 19843521
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||| ||||  ||||||||||| | ||||| |||||||||||||||  |||||||||| |||||||||||||  ||||||||          |||    
T  19843355 caggtttgaagttttctcggcagttaattgccgaagttttcagttttcctcgatagtttactgccgaagttttcctcggtagttaac---------ttcc 19843445  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | |||||||||| ||| || |||||  ||||||||||||| ||||||||||||  ||||||||||||||    
T  19843446 ataattcggcagttaactgccgatgagcatttcggtaaattactaatatgacacagccaaagcatatgtgtcaaca 19843521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 159
Target Start/End: Original strand, 11249476 - 11249568
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagcc 159  Q
    ||||||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||||||   ||||||| ||||||    
T  11249476 caggtttgaggtttcctcggcagttaactgccgaagttt-cagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagcc 11249568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 11095042 - 11095114
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  11095042 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctaggtagtttactgccgaagttttcctc 11095114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 12898645 - 12898784
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| |||||| |||||| | ||| ||||||||||||||| ||||||||||  |||||||||||||   | ||||| |||||||  | |||||    
T  12898645 tttgaggtttcctcggcaattaactgctgaagttttcagttttcctcggtagtttactaccgaagttttcctcggcaattaactgcagccggtttcataa 12898744  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | ||||||||||||||||  |||||  ||||||||||    
T  12898745 ttcggcagttaactgtcgaggggcatttgggtaaattact 12898784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 21343418 - 21343505
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||||||||||| ||| ||||||||| ||||| |||||| |||||||| ||||||||||| | |||||||||||  ||||||||    
T  21343418 tcaggtttgaggtttcctcgacagttaactgccgaagttttcaattttcctcggtagtttactgccaaagttttcctcggtagttaac 21343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 27738722 - 27738584
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||  |||||||||||||   ||||||| |||||||  | |||||    
T  27738722 tttgaggtttcctcggcagttaactgccgaaattttcag-tttcctcggtagtttactaccgaagttttcctcggcagttaactgcagccggttgcataa 27738624  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| ||| |  |||||  ||||||||||    
T  27738623 ttcggcagttaactgccgaagggcatttgggtaaattact 27738584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 11016839 - 11016781
Alignment:
Q  80 cttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagtttt 138  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  11016839 cttcggcaattaactaccgaagttttcagttttcctcagtagtttactgccgaagtttt 11016781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 55176343 - 55176456
Alignment:
Q  110 tttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    ||||||| | |||| |||| ||||||||||||| ||||||||| ||| |||  ||||||||| |||||||||||||||| |  |||||  ||||||||||    
T  55176343 tttcctcggcagttaactgccgaagttttcctcgatagttaactgcatccggttccataattcgacagttaactgtcgaagggcatttcggtaaattact 55176442  T
Q  209 aatgtgacacagcc 222  Q
    | ||||||||||||    
T  55176443 agtgtgacacagcc 55176456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 11094232 - 11094157
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||| |||||| ||||||||||||||||||| ||| || |||||||| ||||||||||| |||||||||||||    
T  11094232 caggtttgtggtttcctcggcagttaactaccgaagttt-caattttcctccgtagtttactgccgaagttttcctc 11094157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 16851222 - 16851102
Alignment:
Q  89 ttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcga 187  Q
    |||||| ||||| ||||||||||||||| ||||||||||  |||||||||||||   |||||||  ||||||| | ||||||| | |||||||||| |||    
T  16851222 ttaactgccgaagttttcagttttcctcggtagtttactaccgaagttttcctcggcagttaactacagccgatttcataattcggcagttaactgccga 16851123  T
Q  188 ggatcattttagtaaattact 208  Q
    ||  ||||| |||||||||||    
T  16851122 ggggcatttgagtaaattact 16851102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 34543089 - 34543181
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaatttt-cagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||| |||| |||||||| ||||| |||| ||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  34543089 gtttgaggtttcctcggtagttaactgccgaagtttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 34543181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 26245450 - 26245296
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| || || |||| |||||||||| ||||||||||  ||||||||| |||   ||||||| |||||||  | |||||    
T  26245450 tttgaggtttcctcggcagttaactgccaaagtttttagttttcctcggtagtttactaccgaagtttttctcggaagttaactgcagccggtttcataa 26245351  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagcca 223  Q
    || | |||||||||| |||||   |||| ||||| |||||  |||| ||||||||    
T  26245350 ttcggcagttaactgccgaggggtatttgagtaatttactcgtgtggcacagcca 26245296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 27739519 - 27739612
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||   |||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  27739519 tcaggtttgagatttcctcggcagttaactgccgaagttttt--ttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 27739612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 8475976 - 8475888
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||||||||| ||||||||||||| ||||| |||||   ||| |||||| |||||||||||  |||||||||||||  |||||||    
T  8475976 aggtttgaggtttcctcggcagttaactgccgaagttttcagtagtattcctcggtagtttactgctgaagttttcctcagcagttaac 8475888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2063076 - 2063121
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttat 46  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||    
T  2063076 atgcataaaacgttgagaattgttgttgataatttatggtttttat 2063121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 4331768 - 4331857
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||| ||||| ||||||||||||| ||||| |||||   ||| ||||||  |||||||||| ||||||||||||||  |||||||    
T  4331768 caggtttgaagtttcctcggcagttaactgccgaagttttcagtagtattcctcgatagtttactgccgaagttttcctcagcagttaac 4331857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 16852016 - 16852090
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||| ||||||||||||| | ||| ||||   |||||||| ||||||||||| |||||||||||||    
T  16852016 aggtttgaggtttcctcggcagttaactgctgaagtttttt-ttttcctcggtagtttactgccgaagttttcctc 16852090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 238
Target Start/End: Complemental strand, 51753697 - 51753526
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaa-attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccat 167  Q
    |||||||||||| ||||||||||||| |||||  |||| |||||||||| |||||||| || |||||||||  ||  |  |||||  ||| ||| || ||    
T  51753697 gtttgaggtttcgtcggcagttaactgccgaagttttttagttttcctcggtagtttattgccgaagtttttttcggttattaactacagtcgattctat 51753598  T
Q  168 aatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    ||||  ||| ||||||| | |||| |||||   || ||| ||| ||||||||||||||| ||||||||||||    
T  51753597 aattcaacaattaactgcctaggagcatttcgatagattgctactgtgacacagccaatccatatgtgtcaa 51753526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14043108 - 14043060
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaa 49  Q
    ||||||||||| |||| |||||| ||||| |||||||||||||||||||    
T  14043108 atgcataaaacgttgagaattgtcgttgaaaatttatggtttttatcaa 14043060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 19988545 - 19988509
Alignment:
Q  102 ttttcagttttcctcagtagtttactgtcgaagtttt 138  Q
    ||||||||||||||||||||||||||| |||||||||    
T  19988545 ttttcagttttcctcagtagtttactgccgaagtttt 19988509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 21342961 - 21342914
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    |||||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  21342961 gtttgaggtttcctcgacagttaactgccgaagttttcagttttcctc 21342914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 40877758 - 40877836
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||| ||||| ||||||||||||| |||||       ||||||||| ||||||||||| ||||||||||||| | |||||||    
T  40877758 aggtttgaagtttcctcggcagttaactgccgaa-------gttttcctcggtagtttactgccgaagttttcctcgaaagttaac 40877836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 4015050 - 4015130
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||||| ||  ||||||||| ||||| |||||   ||| |||||| |||||||||||  ||||||||||||    
T  4015050 tcaggtttgaggtttcctcaacagttaactgccgaagttttcagtagtattcctcggtagtttactgcagaagttttcctc 4015130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 6144301 - 6144390
Alignment:
Q  118 gtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaatta 206  Q
    |||||| |||| |||||||||||||  |||||||| |||||||  ||||||||| | ||||||| ||||||||  ||||||  |||||||    
T  6144301 gtagttaactgccgaagttttcctcggtagttaactgcagccggttccataattcggcagttaattgtcgagggacattttgataaatta 6144390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 14016687 - 14016736
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    |||||||||||||| || ||||||||||  |||| |||||||||||||||    
T  14016687 aggtttgaggtttcctcagcagttaactgtcgaagttttcagttttcctc 14016736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 40872157 - 40872100
Alignment:
Q  102 ttttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagcc 159  Q
    |||||||||||||||  |||||||||| |||| ||||||||  |||||||| ||||||    
T  40872157 ttttcagttttcctcgatagtttactgccgaatttttcctcggtagttaactgcagcc 40872100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 6144282 - 6144322
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc 106  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  6144282 caggtttgaggtttcttcggtagttaactgccgaagttttc 6144322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 10492857 - 10492897
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc 106  Q
    ||||||||||||||| ||||||||||||| ||||| |||||    
T  10492857 caggtttgaggtttcctcggcagttaactgccgaagttttc 10492897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 11016845 - 11016933
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacag 220  Q
    ||||||||||  |||||||| |||||||  ||||||||| | ||||||||||| || |  |||||  ||||||||||| ||||||||||    
T  11016845 agttttcctcggtagttaactgcagccggttccataattcggcagttaactgttgaagggcatttcggtaaattactagtgtgacacag 11016933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 49)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 27649375 - 27649200
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||  |||||||| |||||||  |||    
T  27649375 caggtttgaggtttcttcggcagttaactgccgaactttttagttttcctcggtagtttactgtcgaagttttcctcggtagttaactgcagccggttcc 27649276  T
Q  166 ataattga-cagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | ||| |||||| |||||  |||||  ||||||||||| ||||||||||||||| ||||||||||||||    
T  27649275 ataattcagcagctaactgccgaggggcatttcggtaaattactagtgtgacacagccaatgcatatgtgtcaaca 27649200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 69 - 240
Target Start/End: Original strand, 39896513 - 39896685
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccata 168  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||||||| || |||||||||| ||| |||||||| ||||| |  ||||||    
T  39896513 gtttgaggtttcatcggcagttaactgccgaagttttcagtttttctcggtagtttattgccgaagttttcatcagtagttaactgcagcaggttccata 39896612  T
Q  169 att-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||| |||||||||||||||||    ||||| |||||||| || ||||||||||||||| ||||||||||||||    
T  39896613 attcgacagttaactgtcgagagggattttggtaaattattagtgtgacacagccaatgcatatgtgtcaaca 39896685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 46909529 - 46909634
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| |||||||||||||  |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||||||| |||    
T  46909529 caggtttgaggtttcatcggcagttaactgtcgaagttttcagttttcctcggtagtttactgccgaagttttcctcgatagttaactgcagccgattcc 46909628  T
Q  166 ataatt 171  Q
    ||||||    
T  46909629 ataatt 46909634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 222
Target Start/End: Complemental strand, 9618839 - 9618683
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| ||| ||||||||| ||||| ||||||||||||||| | ||||||||| |||||||||||||  |||||||| |||||||  ||||    
T  9618839 aggtttgaggtttcctcgacagttaactgccgaagttttcagttttcctcgggagtttactgccgaagttttcctcggtagttaactgcagccggttcca 9618740  T
Q  167 taatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagcc 222  Q
    ||||| | |||||||||| | |||| |||||  ||||||||||  ||||||||||||    
T  9618739 taattcggcagttaactgccaaggaacatttcggtaaattactcgtgtgacacagcc 9618683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 238
Target Start/End: Original strand, 35255251 - 35255424
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||  |||||||| |||| ||  |||    
T  35255251 caggtttgaggtttcctcggcagttaactaccgaagttttcagttttcctcggtagtttactgttgaagttttcgtcggtagttaactgcagtcggttcc 35255350  T
Q  166 ataa-ttgacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    |||| | | |||||||||| |||||  ||||   ||||||||||  |||  | |||||||| ||||||||||||    
T  35255351 ataactcggcagttaactgccgaggggcattacggtaaattactcgtgtttctcagccaatgcatatgtgtcaa 35255424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 49875290 - 49875465
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    |||||||| |||||| | ||||||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||||| ||||||||| |||| ||  |||    
T  49875290 caggtttggggtttccttggcagttaactgccgaagttttcagtttttctcggtagtttactgccgaagttttcctcgatagttaactgcagtcggttcc 49875389  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| |  |||||||||||||||  |||||  ||||||||||  |||    |||||||| ||||||||||||||    
T  49875390 ataattcggtagttaactgtcgaggggcatttcggtaaattactcgtgtttatcagccaatgcatatgtgtcaaca 49875465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 66 - 208
Target Start/End: Original strand, 50683803 - 50683946
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||||||| |||| |||||| |  ||||||||  ||||||  |||    
T  50683803 caggtttgaggtttcctcggcagttaactgccgaagttttcagtttttctcggtagtttactgccgaaattttccacggtagttaacttcagccggttcc 50683902  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    |||||| ||||||||||||||||||   |||| |||||||||||    
T  50683903 ataattcgacagttaactgtcgaggggtatttcagtaaattact 50683946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 26769280 - 26769112
Alignment:
Q  71 ttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataat 170  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||   |||||||| |||| ||  ||||||||    
T  26769280 ttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctgggtagttaactgcagtcggttccataat 26769181  T
Q  171 t-gacagttaactgtcgag-gatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    | | |||||||||| |||| ||| |||| |||||||||||  |||  | |||||||| ||||||||||||    
T  26769180 tcggcagttaactgccgagagat-atttgagtaaattactcgtgtttctcagccaatgcatatgtgtcaa 26769112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 28456571 - 28456454
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| | ||||||||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||||| ||||||||| |||||||  ||||    
T  28456571 aggtttgaggtttccttggcagttaactgccgaagttttcagtttttctcggtagtttactgccgaagttttcctcgatagttaactgcagccggttcca 28456472  T
Q  167 taatt-gacagttaactg 183  Q
    ||||| | ||||||||||    
T  28456471 taattcggcagttaactg 28456454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 37991701 - 37991625
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||    
T  37991701 caggtttgaggtttcctcggcagttaactgccgaaattttcagttttcctcggtagtttactgccgaagttttcctc 37991625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 23442391 - 23442288
Alignment:
Q  68 ggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccat 167  Q
    ||||||||||||| |||||||||||||  |||| |||| ||||||||||| |||||||||| ||||||||||||| ||||||||| |||||||  |||||    
T  23442391 ggtttgaggtttcctcggcagttaactgtcgaagtttttagttttcctcaatagtttactgccgaagttttcctcgatagttaactgcagccggttccat 23442292  T
Q  168 aatt 171  Q
    ||||    
T  23442291 aatt 23442288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 7943865 - 7943967
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccata 168  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| | ||||||||||| ||||||||   ||||||| ||||||    
T  7943865 gtttgaggtttcctcggcagttaactgccgaagttttcagttttcctctgtagtttactgccaaagttttcctcgatagttaattacagccgattccata 7943964  T
Q  169 att 171  Q
    |||    
T  7943965 att 7943967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 51291537 - 51291639
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||   |||||||||| |||||||||||||  |||||||| |||||||| |||    
T  51291537 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttccttgatagtttactgccgaagttttcctcggtagttaactgcagccgattcc 51291636  T
Q  166 ata 168  Q
    |||    
T  51291637 ata 51291639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 4883354 - 4883261
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  4883354 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 4883261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 15696752 - 15696860
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatat 231  Q
    ||||||||||  |||||||| |||||||  ||||||||| | |||||||||||||| |  |||||||||||||||||| ||||||||||||||| |||||    
T  15696752 agttttcctcggtagttaactgcagccggttccataattcggcagttaactgtcgaagggcattttagtaaattactagtgtgacacagccaatgcatat 15696851  T
Q  232 gtgtcaaca 240  Q
    |||||||||    
T  15696852 gtgtcaaca 15696860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 37992505 - 37992645
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  37992505 tttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 37992604  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    || | ||||||||||||||||   ||||  |||||||||||    
T  37992605 ttcggcagttaactgtcgagggatatttgggtaaattacta 37992645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 30195342 - 30195481
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  30195342 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 30195441  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    ||  ||||||||||| ||| |  ||||| ||||| |||||    
T  30195442 ttcaacagttaactgccgaagggcatttgagtaatttact 30195481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 49502223 - 49502080
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||  |||   || || ||||| | |    
T  49502223 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcatcggtagtttactgccgaagttttcctcggtagagtactgctgccgatttc 49502124  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    |||||| | |||||||||| |||||| |||||  ||||||||||    
T  49502123 ataattcggcagttaactgccgaggagcatttaggtaaattact 49502080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 18609272 - 18609196
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||    
T  18609272 caggtttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctc 18609196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 49660941 - 49660801
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| ||||||   | |||||    
T  49660941 tttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccagtttcataa 49660842  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    || | |||||||||| | |||| |||||  |||||||||||    
T  49660841 ttcggcagttaactgccaaggagcatttgggtaaattacta 49660801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 28456683 - 28456796
Alignment:
Q  77 tttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gaca 175  Q
    |||| ||||||||||| |  |||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||| |||||||  || |||||| | ||    
T  28456683 tttcctcggcagttaattgtcgaagttttcagttttcctcagtagtttaccgccgaagttttcctcgatagttaactgcagccggttctataattcggca 28456782  T
Q  176 gttaactgtcgagg 189  Q
    |||||||| |||||    
T  28456783 gttaactgccgagg 28456796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 240
Target Start/End: Original strand, 641488 - 641583
Alignment:
Q  146 agttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||||||| |||||||  ||||||||| |||| |||||||  ||||| |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  641488 agttaactgcagccggttccataattcgacaattaactgcggaggaacatttcggtaaattactagtgtgacacagccaatacatatgtgtcaaca 641583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 585768 - 585679
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| ||||||||||||| ||||| ||||||| ||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  585768 tttgaggtttcctcggcagttaactgccgaagttttcag-tttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 585679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 51290441 - 51290355
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||| |||||| ||||||||||| | ||||| ||||||||||| ||| ||||||||||||||||||||| |||  ||||||||    
T  51290441 caggtttgtggtttcctcggcagttaattgccgaagttttcagttttactcggtagtttactgtcgaagtttttctcggtagttaac 51290355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 18609202 - 18609069
Alignment:
Q  77 tttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gaca 175  Q
    |||| |||||||||||||   ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | ||||||| | ||    
T  18609202 tttcctcggcagttaactgtagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataattcggca 18609103  T
Q  176 gttaactgtcgaggatcattttagtaaattacta 209  Q
    |||||||||| |||  ||||||  ||||||||||    
T  18609102 gttaactgtcaaggggcattttgataaattacta 18609069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 30194541 - 30194449
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||||| ||||||||||||| ||||| ||| ||||||||||  ||||||||||| |||||||||||||   ||||||| |||||||    
T  30194541 aggtttgaggtttcctcggcagttaactgccgaagttt-cagttttccttggtagtttactgccgaagttttcctcggcagttaactgcagccg 30194449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 47653660 - 47653752
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||||| ||||||||||||| | ||| ||||||| ||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  47653660 aggtttgaggtttcctcggcagttaactgcagaagttttcag-tttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 47653752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 19914587 - 19914494
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| |||| |||||||||  ||||||||| | |||||||||||||   ||||||| |||||||    
T  19914587 caggtttgaggtttcctcggcagttaactgccgaagtttt-agttttcctgggtagtttacggccgaagttttcctcggcagttaactgcagccg 19914494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 21700797 - 21700891
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||| ||||||| | | ||| ||||||||||||||| ||||||||||| | |||||||||||   ||||||| |||||||    
T  21700797 caggtttgaggtttcatcgacagttaagtgcagaagttttcagttttcctcggtagtttactgccaaagttttcctcggcagttaactgcagccg 21700891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 45780886 - 45780948
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| ||||    
T  45780886 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagttaactg 45780948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 44726486 - 44726413
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||| || ||||||||||||| ||||| |||| |||||| ||| ||||||||||| |||||||||||||    
T  44726486 gtttgaggtgtcatcggcagttaactgccgaagtttttagtttttctcggtagtttactgccgaagttttcctc 44726413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 586557 - 586650
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||   |||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  586557 tcaggtttgagatttcctcggcagttaactgccgaagttttt--ttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 586650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 45780307 - 45780177
Alignment:
Q  110 tttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    ||||||| | |||| |||| ||||||||| |||  |||||| | |||||||  ||||||||| |||||||||||| |||||  ||||| |||||||||||    
T  45780307 tttcctcggcagttaactgccgaagtttttctcggtagtta-ctgcagccggttccataattcgacagttaactgccgagggacatttgagtaaattact 45780209  T
Q  209 aatgtgacacagccaatacatatgtgtcaaca 240  Q
     ||||  | |||||||| ||||||||||||||    
T  45780208 catgtttctcagccaatgcatatgtgtcaaca 45780177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 47652815 - 47652740
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||  ||||||||||||| ||||| |||||| |||||||| | |||| |||| |||||||||||||    
T  47652815 aggtttgaggttttctcggcagttaactgccgaagttttcaattttcctcgggagttaactgccgaagttttcctc 47652740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 49875059 - 49874972
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacaca 219  Q
    |||||||||| ||||||||| |||||||  ||||||||| | ||||||||||||||||  || ||||||||||||||  |||||||||    
T  49875059 agttttcctcgatagttaactgcagccggttccataattcggcagttaactgtcgagggacaatttagtaaattactcgtgtgacaca 49874972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 30287819 - 30287762
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtt 123  Q
    ||||||||||||||| |||||||||||||  |||| ||||||||||||||| ||||||    
T  30287819 caggtttgaggtttcctcggcagttaactgtcgaagttttcagttttcctcggtagtt 30287762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 49661711 - 49661760
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  49661711 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 49661760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 45780927 - 45781035
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatat 231  Q
    ||||||||||  |||||||| |||||||  ||||||||| |||||||||||| |||||  |||||  ||||||||||  |||  | |||||||| |||||    
T  45780927 agttttcctcggtagttaactgcagccggttccataattcgacagttaactgacgaggggcatttgggtaaattactcgtgtttctcagccaatgcatat 45781026  T
Q  232 gtgtcaaca 240  Q
    |||||||||    
T  45781027 gtgtcaaca 45781035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 43012659 - 43012722
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaa 133  Q
    ||||||||||| ||||||||| ||| ||||| |||||||||||||||  |||||||||| ||||    
T  43012659 tttgaggtttcctcggcagttgactgccgaagttttcagttttcctcgatagtttactgccgaa 43012722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 50683318 - 50683259
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgt 129  Q
    ||||||||||  ||||||||||||| ||||| ||||||||||||||| |||||| |||||    
T  50683318 tttgaggttttctcggcagttaactgccgaagttttcagttttcctcggtagttaactgt 50683259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 51461833 - 51461892
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    |||||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||| ||||    
T  51461833 gtttgaggtttcctcgtcagttaactgccgaagttttcagttttcctcggtagttaactg 51461892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 6328844 - 6328906
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||||||||||| |  || | |||||||||||||||||||||| ||||    
T  6328844 caggtttgaggtttcatcggcagttaattgtcgtagttttcagttttcctcagtagttaactg 6328906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 43011890 - 43011840
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  43011890 caggtttgaggttttctcggcagttaactgccgaagttttcagttttcctc 43011840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 240
Target Start/End: Original strand, 49502814 - 49502948
Alignment:
Q  107 agttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaatt 205  Q
    |||||||||| |||||| |||| |||||||||||||  |||||||| ||||||   ||||||||| | ||||||| || ||||   |||||  |||||||    
T  49502814 agttttcctcggtagttaactgccgaagttttcctcggtagttaactgcagccagttccataattcggcagttaattgccgagagacatttgggtaaatt 49502913  T
Q  206 actaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||  |||  | |||||||| ||||||||||||||    
T  49502914 actcgtgtttctcagccaatgcatatgtgtcaaca 49502948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 641145 - 641088
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtt 123  Q
    ||||||||||||||| ||| || |||||| ||||| ||||||||||||||| ||||||    
T  641145 caggtttgaggtttcctcgacaattaactgccgaagttttcagttttcctcggtagtt 641088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 35254630 - 35254566
Alignment:
Q  97 cgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccga 161  Q
    |||| |||||||||||||||| || ||||||| ||||||||| |||  |||||||| ||||||||    
T  35254630 cgaagttttcagttttcctcaatattttactgccgaagtttttctcggtagttaactgcagccga 35254566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 15696710 - 15696773
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    |||||||||||||||| ||  ||||| |||||| || ||||||||||||||| |||||| ||||    
T  15696710 tcaggtttgaggtttcctcaacagttgactaccaaagttttcagttttcctcggtagttaactg 15696773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17514726 - 17514762
Alignment:
Q  116 cagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||| |||| |||||||||||||||||||||||    
T  17514726 cagtagttaactgccgaagttttcctcaatagttaac 17514762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 106
Target Start/End: Original strand, 26770537 - 26770577
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc 106  Q
    ||||||||||||||| ||||||||||||| || ||||||||    
T  26770537 caggtttgaggtttcctcggcagttaactgccaaaattttc 26770577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 134265 - 134448
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||| |   |||||||||| |||||||||||||  |||||||| |||||||  ||     
T  134265 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttctttgttagtttactgccgaagttttcctcggtagttaactgcagccggttct 134364  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaacatcgattct 248  Q
    |||||| | |||||||||| |||||| |||||  ||||||||||| ||||||||||||||| |||||||||||||||| |||||    
T  134365 ataattcggcagttaactgccgaggagcatttcggtaaattactagtgtgacacagccaatgcatatgtgtcaacatcaattct 134448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 46169152 - 46169335
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    |||||||||||| || ||||||||||||| ||||| |||||| |||||||| ||||||||||| |||||||||||||   ||||||| |||||||  |||    
T  46169152 caggtttgaggtgtcctcggcagttaactgccgaagttttcaattttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggttcc 46169251  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaacatcgattct 248  Q
    |||||| | |||||||||| |||||| |||||  ||||||||||| ||||||| ||||||| |||||||||||||| |||||||    
T  46169252 ataattcggcagttaactgacgaggagcatttcggtaaattactagtgtgacagagccaatgcatatgtgtcaacaacgattct 46169335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 32537633 - 32537493
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||| ||| |||| | ||    
T  32537633 aggtttgaggtttcctcggcagttaactatcgaagttttcagttttcctcggtagtttactgccgaagttttcctcgatagttaactgcaaccgatttca 32537534  T
Q  167 taatt-gacagttaactgtcgaggatcattttagtaaatta 206  Q
    ||||| |||||||||||| |||||| ||||| |||||||||    
T  32537533 taattcgacagttaactgccgaggaacatttcagtaaatta 32537493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 1736043 - 1736217
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| |||||||||||||  |||| ||||||||||| ||| ||||||||||| |||||||||||||  |||||||| |||||||  ||||    
T  1736043 aggtttgaggtttcctcggcagttaactgtcgaagttttcagttttactcggtagtttactgccgaagttttcctcggtagttaactgcagccggttcca 1736142  T
Q  167 taatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||||| | |||||||||| | || | |||||  |||||||| |||||||||||| ||||| ||||||||||||||    
T  1736143 taattcggcagttaactgccaagaaacatttcggtaaattattaatgtgacacaaccaatgcatatgtgtcaaca 1736217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 219
Target Start/End: Original strand, 40240324 - 40240478
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| |||||||||||||  |||| ||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||  |||    
T  40240324 caggtttgaggtttcctcggcagttaactggcgaagttttcagttttcctcggtagtttactgccgaagttttcctcagtagttaactgcagccggttcc 40240423  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacaca 219  Q
    | |||| | |||||||||| | |||  ||||| |||||||||||| |||||||||    
T  40240424 acaattcggcagttaactgccaaggggcatttcagtaaattactagtgtgacaca 40240478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 36480491 - 36480666
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| |||  |||||||||||||  |||||||| |||||||  |||    
T  36480491 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagttaactaccgaagttttcctcggtagttaactgcagccggttcc 36480590  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | |||||||||| |||||| |||||   |||||||||  |||    |||||||| ||||||||||||||    
T  36480591 ataattcggcagttaactgccgaggaacatttggataaattacttgtgtttatcagccaatgcatatgtgtcaaca 36480666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 40240662 - 40240801
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| |||||||||||||  |||| ||||||||||| ||| |||||||||||||||||||||||||| |||||||| |||||||  ||||    
T  40240662 aggtttgaggtttcctcggcagttaactgacgaagttttcagtttttctcggtagtttactgtcgaagttttcctcagtagttaactgcagccggttcca 40240761  T
Q  167 taatt-gacagttaactgtcgaggatcattttagtaaatt 205  Q
    ||||| | |||||||||| | |||  ||||| ||||||||    
T  40240762 taattcggcagttaactgccaaggggcatttcagtaaatt 40240801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 40832761 - 40832641
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||  ||||||| |||||||  | |||||    
T  40832761 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcagcagttaactgcagccggtttcataa 40832662  T
Q  170 -ttgacagttaactgtcgagg 189  Q
     ||| |||||||||| |||||    
T  40832661 tttggcagttaactgccgagg 40832641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 14201485 - 14201624
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  14201485 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 14201584  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| |||||  ||||| ||||| |||||    
T  14201585 ttcggcagttaactgccgaggggcatttgagtaatttact 14201624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 46254399 - 46254493
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  46254399 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 46254493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 213
Target Start/End: Original strand, 9655860 - 9656008
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||  ||| ||||||||| ||||| ||||||||||||||| | ||||||||| |||||||||||||  |||||||| |||| ||  |||    
T  9655860 caggtttgaggttttctcgacagttaactgccgaagttttcagttttcctcggcagtttactgccgaagttttcctcggtagttaactgcagtcggttcc 9655959  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgt 213  Q
    |||||| | |||||||||| |||||  |||||  |||||||||| ||||    
T  9655960 ataattcggcagttaactgccgaggggcatttgggtaaattactcatgt 9656008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 53536044 - 53535936
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatat 231  Q
    |||||||||| ||||||||| |||||||  ||||||||| | |||||||||| ||| |  |||||||||||||||||| ||||||||||||||| |||||    
T  53536044 agttttcctcgatagttaactgcagccggttccataattcggcagttaactgccgaagggcattttagtaaattactagtgtgacacagccaatgcatat 53535945  T
Q  232 gtgtcaaca 240  Q
    |||||||||    
T  53535944 gtgtcaaca 53535936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 28157700 - 28157525
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||| | | ||| |||| |||||||||| ||||||||||| |||||||||||||  |||||||  | |||||  |||    
T  28157700 caggtttgaggtttcctcggcagttaattgctgaagtttttagttttcctcggtagtttactgccgaagttttcctcggtagttaattgtagccggttcc 28157601  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | ||||||| || |||||  |||||   |||||||||  |||  | |||||||||||||||||||||||    
T  28157600 ataattcggcagttaattgccgaggggcatttggataaattactcgtgtttctcagccaatacatatgtgtcaaca 28157525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 29307447 - 29307522
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  29307447 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctc 29307522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 37295352 - 37295279
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttc 139  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||    
T  37295352 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttc 37295279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 51037419 - 51037495
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||| || ||||||||||| |||||||||||||    
T  51037419 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcatcggtagtttactgccgaagttttcctc 51037495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 28322071 - 28322246
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||  ||| ||||||||| |||||  ||| |||||||||| ||||| ||||| |||||||||| ||  |||||||| ||||| |  |||    
T  28322071 caggtttgaggttttctcgacagttaactgccgaagattttagttttcctcggtagtatactgccgaagttttcttcggtagttaactgcagctggttcc 28322170  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | |||||||||  |||||  ||||| |||||||||||  |||  | |||||||| ||||||||||||||    
T  28322171 ataattcggcagttaactaccgagggacatttgagtaaattactcgtgtttctcagccaatgcatatgtgtcaaca 28322246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 40833564 - 40833655
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||| |||||||||| || ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  40833564 gtttgaggtttcctcggcagttatctgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 40833655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 50447127 - 50447036
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaatttt-cagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| ||||||||||||| ||||| |||| ||||||||||| ||||||||||| ||||||||||||| | ||||||| |||||||    
T  50447127 tttgaggtttcctcggcagttaactgccgaagtttttcagttttcctcggtagtttactgccgaagttttcctcgacagttaactgcagccg 50447036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 12376077 - 12375951
Alignment:
Q  96 ccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcat 194  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||||  |||||||| |||||||  ||||||||| | |||||||||| |||||  |||    
T  12376077 ccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggtagttaactgcagccggttccataattcggcagttaactgccgaggtacat 12375978  T
Q  195 tttagtaaattactaatgtgacacagc 221  Q
    |||   ||||||||  |||||||||||    
T  12375977 tttgaaaaattactcgtgtgacacagc 12375951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 36479915 - 36479829
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||||| ||||||||||||||||||||| || |||||| ||| | || ||| ||||||| |||||||||||||||||||||||    
T  36479915 caggtttgagctttcttcggcagttaactaccaaagttttcaatttacttcggtaatttactgccgaagttttcctcaatagttaac 36479829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 160
Target Start/End: Complemental strand, 14200681 - 14200589
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    |||||||||||||| ||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  14200681 aggtttgaggtttcctcggcagttaactgccgaagttt-cagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 14200589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 21342814 - 21342752
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  21342814 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactg 21342752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 1735490 - 1735405
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||  ||||| ||| | |||||||||||||  ||||||||    
T  1735490 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttccttggtagtgtacagccgaagttttcctcggtagttaac 1735405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 11566778 - 11566839
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttact 127  Q
    ||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  11566778 caggtttgaggttttctcggcagttaactgccgaagttttcagttttcctcagtagtttact 11566839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 35631283 - 35631167
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| |||||||||| || ||||| |||| | ||||||||  ||||||||||||||||||||||||   ||||||| |||||||  ||||    
T  35631283 aggtttgaggtttcctcggcagtta-ctgccgaagtttttaattttcctcgatagtttactgtcgaagttttcctcggcagttaactgcagccggttcca 35631185  T
Q  167 taatt-gacagttaactg 183  Q
    ||||| | ||||||||||    
T  35631184 taattcggcagttaactg 35631167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 38369134 - 38369227
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||   |||||||| |||||||||||||||||||||||||   ||||||| |||||||    
T  38369134 tcaggtttgagatttcctcggcagttaactgccgaagttttt--ttttcctcggtagtttactgtcgaagttttcctcggcagttaactgcagccg 38369227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 23221626 - 23221764
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||| ||||||| ||||||||||  |||||||||||||   ||||||| |||||||  | |||||    
T  23221626 tttgaggtttcctcggcagttaactgccgaagttttcag-tttcctcggtagtttactaccgaagttttcctcggcagttaactgcagccggtttcataa 23221724  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| ||| |  ||||| | |||||||||    
T  23221725 ttcggcagttaactgccgaagggcatttgaataaattact 23221764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 38368345 - 38368256
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||| ||| ||||||||||  |||||||||||||   ||||||| |||||||    
T  38368345 tttgaggtttcctcggcagttaactgccgaagttttcagtttt-ctcggtagtttactaccgaagttttcctcggcagttaactgcagccg 38368256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 7484844 - 7484787
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttact 127  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||    
T  7484844 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttact 7484787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 9655309 - 9655227
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||||| |||| |||||||| ||||| ||||||||||| |||  |||||||||| ||||||||| |||  ||||||||    
T  9655309 tttgaggtttcctcggtagttaactgccgaagttttcagtttttctcgatagtttactgccgaagtttttctcggtagttaac 9655227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 21343328 - 21343414
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||||||||| ||||||||||| |   ||| ||||||||||||||  ||||||||||  |||||||||||||  ||||||||    
T  21343328 caggtttgaggtttcctcggcagttaattgttgaagttttcagttttccttggtagtttactaccgaagttttcctcggtagttaac 21343414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 40239720 - 40239658
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||||||||||||| || || ||||||||||||||| |||||| ||||    
T  40239720 caggtttgaggtttcctcggcagttaactgccaaagttttcagttttcctcggtagttaactg 40239658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 40963666 - 40963716
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  40963666 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 40963716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 46165838 - 46165776
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| |||| |||||||| |||||||||| |||||||||| |||||| ||||    
T  46165838 caggtttgaggtttcctcggtagttaactgccgaaatttttagttttcctcggtagttaactg 46165776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 28320620 - 28320555
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcga 132  Q
    |||||||||||||| ||||||||||||| ||||| ||||||||||||||  | |||| ||||||||    
T  28320620 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttccttgggagttaactgtcga 28320555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 53536148 - 53536035
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||               |||||||||||||||| ||| ||||||||| |||||    
T  53536148 atgcataaaacgttgagaattgttgttgataatttacggtttttatcaa--aaaaaaaaaaaaatcaggtttgaggtttcctcgacagttaactgccgaa 53536051  T
Q  101 attttcagttttcctc 116  Q
     |||||||||||||||    
T  53536050 gttttcagttttcctc 53536035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 23220799 - 23220706
Alignment:
Q  65 tcaggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| |||| ||||||||||||| ||||| ||||   |||||||| ||||||||||| |||||||||| ||   ||||||| |||||||    
T  23220799 tcaggtttgagatttcctcggcagttaactgccgaagtttt--tttttcctcggtagtttactgccgaagttttcatcggcagttaactgcagccg 23220706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 29306645 - 29306573
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||| ||||||||||||| |  || |||||| |||||||| ||||||||||| |||| ||||||||    
T  29306645 tttgaggtttcctcggcagttaactgcaaaagttttcaattttcctcggtagtttactgccgaaattttcctc 29306573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 16473636 - 16473717
Alignment:
Q  74 aggtttcttcggcagttaactaccgaaattttcagtt---ttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||| ||||||||||||| ||||| ||||||||    ||||||||||||||||||  ||||||||||||  ||||||||    
T  16473636 aggtttcctcggcagttaactgccgaagttttcagtagtattcctcagtagtttactgcagaagttttcctcggtagttaac 16473717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 46253581 - 46253462
Alignment:
Q  90 taactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgag 188  Q
    ||||| ||||| ||||||||||||||| |||||| |||| |||||||||||||   ||||||| |||||||  | ||||||| | |||||||||| |||     
T  46253581 taactgccgaagttttcagttttcctcggtagttcactgccgaagttttcctcggcagttaactgcagccggtttcataattcggcagttaactgccgat 46253482  T
Q  189 gatcattttagtaaattact 208  Q
    |  ||||| ||||| |||||    
T  46253481 gggcatttgagtaatttact 46253462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 55587476 - 55587334
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||| |||| |||| ||||||||||||| ||||| ||||||| |||| || ||||||||||  |||||||||||||   ||||||| |||||||  | |    
T  55587476 caggtgtgagatttcctcggcagttaactgccgaagttttcag-tttcttcggtagtttactaccgaagttttcctcggcagttaactgcagccggtttc 55587378  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    |||||| | |||||||||| ||| |  |||||  ||||||||||    
T  55587377 ataattcggcagttaactgccgaagggcatttgggtaaattact 55587334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 7087974 - 7087924
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  7087974 caggtttgaggtttcctcgacagttaactgccgaagttttcagttttcctc 7087924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 40963047 - 40962985
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||| || |||||| ||||| ||||||||||||||| |||||| ||||    
T  40963047 caggtttgaggtttcatcgacaattaactgccgaagttttcagttttcctcggtagttaactg 40962985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 46165797 - 46165707
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagcc 222  Q
    ||||||||||  |||||||| |||||||  ||||||||| |||||||||||| ||| |  |||||  ||||||||||| ||||||||||||    
T  46165797 agttttcctcggtagttaactgcagccggttccataattcgacagttaactgccgaaggacatttcggtaaattactagtgtgacacagcc 46165707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 7485614 - 7485688
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| |||||  |||   |||||||| ||||||||||| |||||| ||||||    
T  7485614 caggtttgaggtttcctcggcagttaactgccgaa--ttttgtttttcctcggtagtttactgccgaagtcttcctc 7485688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 28234567 - 28234492
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagtttt 138  Q
    ||||||||||||||| ||||||||||||| ||||| |||||   ||| |||||| |||||||||||  ||||||||    
T  28234567 caggtttgaggtttcctcggcagttaactgccgaagttttcagtagtattcctcggtagtttactgcagaagtttt 28234492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 51036594 - 51036549
Alignment:
Q  71 ttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    |||||||||| |||| |||||||||||||| |||||||||||||||    
T  51036594 ttgaggtttcctcggtagttaactaccgaatttttcagttttcctc 51036549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 106
Target Start/End: Complemental strand, 42528957 - 42528917
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc 106  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  42528957 caggtttgaggtttcttcggcagttaactgccgaagttttc 42528917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45791491 - 45791253
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| |||| ||||||||||||||||||| ||||||||||||               |||| ||||||||||| ||| ||||||||| |||||    
T  45791491 atgcataaaacgttgagaattgttgttgataatttacggtttttatcaa-aaaaaaaaaaaaaatcagatttgaggtttcatcgacagttaactgccgaa 45791393  T
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttag 199  Q
     |||||| |||||||| ||||||||||  |||||||||||||  |||||||| |||||||  | ||||||| |||||||||||| |||    ||||||||    
T  45791392 gttttcacttttcctcggtagtttactaccgaagttttcctcggtagttaactgcagccggtttcataattcgacagttaactgccgaaagacattttag 45791293  T
Q  200 taaattactaatgtgacacagccaatacatatgtgtcaac 239  Q
    |||||||||| | ||||||||||||| |||||||||||||    
T  45791292 taaattactagtatgacacagccaatgcatatgtgtcaac 45791253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 30471495 - 30471651
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| ||||||| ||||||||||||| ||||||||| ||| | |  |||    
T  30471495 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtaatttactgccgaagttttcctcgatagttaactgcaactggttcc 30471594  T
Q  166 ataattgacagttaactgtcgaggatcattttagtaaattactaatgtgacacagcc 222  Q
    ||||||| |||||||||  |||||  ||||| |||||||||||  ||||||||||||    
T  30471595 ataattggcagttaactaccgaggggcatttcagtaaattactcgtgtgacacagcc 30471651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 29113063 - 29113246
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |||||| |||| ||||||||  |||||||| |||||||  |||    
T  29113063 caggtttgaggtttcctcggcagttaactgccgaaattttcagttttcctcggtagattactgccgaatttttcctcggtagttaactgcagccggatcc 29113162  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaacatcgattct 248  Q
    |||||| | |||| ||||| |||||   ||||   ||||||||| ||||  | |||||||| |||||||||||||| |||||||    
T  29113163 ataattcggcagtaaactgccgagggatatttggataaattactcatgtttctcagccaatgcatatgtgtcaacagcgattct 29113246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 248
Target Start/End: Original strand, 29097811 - 29097994
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||| |||||| |||| ||||||||  |||||||| |||||||  |||    
T  29097811 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagattactgccgaatttttcctcggtagttaactgcagccggttcc 29097910  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaacatcgattct 248  Q
    |||||| | |||||||||| |||||   ||||   |||||||||  |||  | |||||||| |||||||||||||| |||||||    
T  29097911 ataattcggcagttaactgccgagggatatttggataaattactcgtgtttctcagccaatgcatatgtgtcaacagcgattct 29097994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 238
Target Start/End: Original strand, 35840077 - 35840247
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccata 168  Q
    |||||||||||| || |||||||||| ||||| |||||| |||| ||| ||||||||||| |||||||||||||   | ||||| |||||||  ||||||    
T  35840077 gtttgaggtttcgtcagcagttaactgccgaagttttcaatttttctcggtagtttactgccgaagttttcctcggaaattaactgcagccggttccata 35840176  T
Q  169 att-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    ||| |||| ||||||| |||| | ||||||  |||||||||  |||||||| || ||||||||||||||||    
T  35840177 attcgacaattaactgccgagaaacattttgataaattacttgtgtgacacggcaaatacatatgtgtcaa 35840247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 49140775 - 49140651
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |    
T  49140775 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttc 49140676  T
Q  166 ataatt-gacagttaactgtcgagg 189  Q
    |||||| | |||||||||| |||||    
T  49140675 ataattcggcagttaactgccgagg 49140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 12080570 - 12080487
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagtt 149  Q
    ||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||||    
T  12080570 caggtttgaggtttcctcggcaattaactgccgaagttttcagttttcctcagtagtttactgccgaagttttcctcagtagtt 12080487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 42583011 - 42583105
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  42583011 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 42583105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 30468572 - 30468467
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| || || ||||||||||| ||| ||||||||||| |||||||||| || ||||||||| |||||||  |||    
T  30468572 caggtttgaggtttcctcggcagttaactgcctaagttttcagtttttctcggtagtttactgccgaagttttcttcgatagttaactgcagccggttcc 30468473  T
Q  166 ataatt 171  Q
    ||||||    
T  30468472 ataatt 30468467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 28563776 - 28563656
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||   ||||||| | |||||  | |||||    
T  28563776 tttgaggtttcctcggcagttaactgcagaagttttcagttttcctcagtagtttactgccgaagttttcctcggcagttaactgtagccggtttcataa 28563677  T
Q  170 tt-gacagttaactgtcgagg 189  Q
    || | ||||||||||||||||    
T  28563676 ttcggcagttaactgtcgagg 28563656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 42794311 - 42794172
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| | ||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  42794311 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcgggagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 42794212  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||| ||| |||||| ||||| ||||| |||||    
T  42794211 ttcggcagttatctgccgaggagcatttgagtaatttact 42794172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 46907654 - 46907515
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  46907654 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 46907555  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| ||| |  ||||| ||||| |||||    
T  46907554 ttcggcagttaactgccgaagggcatttgagtaatttact 46907515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 7998 - 8092
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| || |||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  7998 caggtttgaggtttcctcagcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 8092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 26833425 - 26833519
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| ||| ||||||||||||||| ||||||||||||||| ||||||||||| | |||||||| ||  |||||||| |||||||    
T  26833425 caggtttgaggtttcctcgacagttaactaccgaagttttcagttttcctcggtagtttactgccaaagttttcttcggtagttaactgcagccg 26833519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 38083916 - 38083839
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctca 143  Q
    ||||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||||||||| ||||||||||||||    
T  38083916 caggtttaaggtttcctcggcagttaactgccgaaattttcagttttcttccgtagtttactgccgaagttttcctca 38083839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 12210545 - 12210617
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  12210545 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctc 12210617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 47750646 - 47750522
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| | ||| |||||| |||||||| || |||||||| |||||||||||||   ||||||| |||||||  |||    
T  47750646 caggtttgaggtttcctcggcagttaactgctgaagttttcatttttcctcggtggtttactgccgaagttttcctcgggagttaactgcagccggttcc 47750547  T
Q  166 ataatt-gacagttaactgtcgagg 189  Q
    |||||| | |||||||||| |||||    
T  47750546 ataattcggcagttaactgccgagg 47750522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 27657941 - 27658016
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||    
T  27657941 aggtttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctc 27658016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 208
Target Start/End: Complemental strand, 42582230 - 42582091
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    |||||| |||||||||||||||||| ||||| |||||||||||||||  |||||||||| |||||||||||||   ||||||| | |||||  | |||||    
T  42582230 tttgagatttcttcggcagttaactgccgaagttttcagttttcctcgatagtttactgccgaagttttcctcggcagttaactgtagccggtttcataa 42582131  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| |||||  ||||| ||||| |||||    
T  42582130 ttcggcagttaactgccgagggacatttgagtaatttact 42582091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 49141576 - 49141715
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||  |||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  49141576 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcgatagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 49141675  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    ||   |||||||||| |||||  ||||| ||||| |||||    
T  49141676 ttctgcagttaactgccgaggggcatttgagtaatttact 49141715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 7187 - 7097
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| ||||||||||||| | ||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||    
T  7187 tttgaggtttcctcggcagttaactgcagaagttttcagttttcctcggtagtttactgccgaagttttcctcggcagttaactgcagccg 7097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 239
Target Start/End: Original strand, 19073529 - 19073701
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||||||||| ||| ||||||||| ||||| |||||||||||| || ||| ||||||| || |||||| |||   |||| || |||||||  | ||    
T  19073529 aggtttgaggtttcctcgtcagttaactgccgaagttttcagttttcgtcggtaatttactgccgtagtttttctcggaagtt-actgcagccggtttca 19073627  T
Q  167 taatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaac 239  Q
    ||||| |||||||||||| |||||   ||||  ||||||||||| |||||||||  |||| |||||||||||||    
T  19073628 taattcgacagttaactgccgagggatatttcggtaaattactagtgtgacacaatcaatgcatatgtgtcaac 19073701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 240
Target Start/End: Complemental strand, 39173089 - 39172968
Alignment:
Q  120 agtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacac 218  Q
    |||||||||||||||||||||||   ||||||| |||||||  ||||||| | | |||||||||| |||||   ||||  ||||||||||| ||||||||    
T  39173089 agtttactgtcgaagttttcctcgggagttaactgcagccggttccataactcggcagttaactgccgaggggtatttcggtaaattactagtgtgacac 39172990  T
Q  219 agccaatacatatgtgtcaaca 240  Q
    ||||||| ||||||||||||||    
T  39172989 agccaatgcatatgtgtcaaca 39172968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 32606890 - 32606814
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||   |||||||||  ||||||||||||    
T  32606890 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcgacagtttactgcagaagttttcctc 32606814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 5026657 - 5026595
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||| ||||    
T  5026657 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagttaactg 5026595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 12081173 - 12081235
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| ||||    
T  12081173 caggtttgaggtttctttggcagttaactgccgaagttttcagttttcctcagtggttaactg 12081235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 26832900 - 26832843
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtt 123  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||    
T  26832900 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtt 26832843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 26832859 - 26832751
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatat 231  Q
    ||||||||||  ||||||||  ||||||  ||||||||| | ||||||||||  |||   ||||| |||||||||||| ||||||||||||||| |||||    
T  26832859 agttttcctcggtagttaactacagccggttccataattcggcagttaactgctgagtggcatttcagtaaattactagtgtgacacagccaatgcatat 26832760  T
Q  232 gtgtcaaca 240  Q
    |||||||||    
T  26832759 gtgtcaaca 26832751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 38084715 - 38084787
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||| ||| ||||||||| | ||| ||||||||||||||| |||||||| || |||||||||||||    
T  38084715 tttgaggtttcctcgacagttaactgcagaagttttcagttttcctcggtagtttaatgccgaagttttcctc 38084787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 48901436 - 48901568
Alignment:
Q  109 ttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattac 207  Q
    |||||||| ||||||||||| |||||||||||||  |||||||| |||||||  ||||||||| | |||||||||| | ||   |||||  |||||||||    
T  48901436 ttttcctcggtagtttactgccgaagttttcctcggtagttaactgcagccggttccataattcggcagttaactgcctagagacatttgggtaaattac 48901535  T
Q  208 taatgtgacacagccaatacatatgtgtcaaca 240  Q
    |  |||  | |||||||| ||||||||||||||    
T  48901536 tcgtgtttctcagccaatgcatatgtgtcaaca 48901568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 25195367 - 25195317
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  25195367 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 25195317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 46908450 - 46908500
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  46908450 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 46908500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 189
Target Start/End: Complemental strand, 48000304 - 48000216
Alignment:
Q  102 ttttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgagg 189  Q
    ||||||||||||||| ||||||||||| ||||||  ||||| | ||||||| |||| ||  ||||||||| |||||||||||| |||||    
T  48000304 ttttcagttttcctcggtagtttactgccgaagtcctcctcgacagttaactgcagtcggttccataattcgacagttaactgccgagg 48000216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 12080503 - 12080435
Alignment:
Q  107 agttttcctcagtagttt----actgtcgaagttttcctcaatagttaaccgcagccgactccataatt 171  Q
    ||||||||||||||||||    |||| ||||||||||||| ||||||||| |||||||| |||||||||    
T  12080503 agttttcctcagtagtttgtttactgccgaagttttcctcgatagttaactgcagccgattccataatt 12080435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 29097258 - 29097143
Alignment:
Q  127 tgtcgaagttttcctcaatagttaaccgcagccgactccataa-ttgacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaat 225  Q
    ||||||||||||||||  |||||||| |||||||  ||||||| | | ||||||||||| ||||| ||||| |||||||| ||  |||    ||||||||    
T  29097258 tgtcgaagttttcctcggtagttaactgcagccggttccataactcggcagttaactgttgaggagcatttgagtaaatttctcgtgtttttcagccaat 29097159  T
Q  226 acatatgtgtcaacat 241  Q
     |||||||||||||||    
T  29097158 gcatatgtgtcaacat 29097143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 5026616 - 5026539
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattacta 209  Q
    ||||||||||  |||||||| |||||||  ||||||||| ||||||||||||  ||||| ||||| ||||||||||||    
T  5026616 agttttcctcggtagttaactgcagccggttccataattcgacagttaactgctgaggagcatttcagtaaattacta 5026539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 189
Target Start/End: Original strand, 7953719 - 7953835
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcca 166  Q
    |||||||| ||||| ||||||||||||| |||||       ||||||||| |||||||| || ||||||||||||||  ||||||| |||| ||  ||||    
T  7953719 aggtttgaagtttcctcggcagttaactgccgaa-------gttttcctcggtagtttattgccgaagttttcctcagcagttaactgcagtcggttcca 7953811  T
Q  167 taatt-gacagttaactgtcgagg 189  Q
    ||||| | |||||||||| |||||    
T  7953812 taattcggcagttaactgccgagg 7953835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 31512424 - 31512363
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    |||||||||||||| ||| ||||||||| | ||| ||||||||||||||||| |||| ||||    
T  31512424 aggtttgaggtttcctcgacagttaactgcagaagttttcagttttcctcagcagttaactg 31512363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 238
Target Start/End: Complemental strand, 48900975 - 48900806
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| |||||||||||||  | || ||||||||||| ||| |||||| | ||  |||||||||||| | | | ||| |||||||  |||||||    
T  48900975 tttgaggtttcctcggcagttaactgtcaaagttttcagtttttctcggtagttcattgctgaagttttcctcgaaaatcaactgcagccggttccataa 48900876  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    || | |||||||||| | | ||  ||||  ||||||||||  |||  | |||||||| ||||||||||||    
T  48900875 ttcggcagttaactgccaatgagtatttgggtaaattacttgtgtttctcagccaatgcatatgtgtcaa 48900806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 208
Target Start/End: Complemental strand, 25195326 - 25195250
Alignment:
Q  133 agttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    |||||||||| ||||||||| |||| ||| ||||||||| |||||||||||| ||| || ||||| | |||||||||    
T  25195326 agttttcctcgatagttaactgcagacgattccataattcgacagttaactgccgatgaacatttgaataaattact 25195250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 46331975 - 46332091
Alignment:
Q  90 taactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgag 188  Q
    ||||| ||||| |||||| ||||| || |||||||| || ||||||||| ||||||||||||| |||  ||| |  |||||| |||||||||||| |||     
T  46331975 taactgccgaagttttcaattttcttcggtagtttaatgccgaagtttttctcaatagttaactgcaatcgatttgataattcgacagttaactgccgat 46332074  T
Q  189 gatcattttagtaaatt 205  Q
    || ||||| | ||||||    
T  46332075 gaacatttgaataaatt 46332091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 29112451 - 29112320
Alignment:
Q  110 tttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa-ttgacagttaactgtcgaggatcattttagtaaattact 208  Q
    ||||||||| |||| |||| |||||||||||||   ||||||| |||||||  | ||||| | | || ||||||| |||||| ||||| |||||||||||    
T  29112451 tttcctcagcagttaactgccgaagttttcctcggcagttaactgcagccggtttcataactcggcaattaactgccgaggagcatttgagtaaattact 29112352  T
Q  209 aatgtgacacagccaatacatatgtgtcaaca 240  Q
      |||    |||||||| ||||||||||||||    
T  29112351 tgtgtttttcagccaatgcatatgtgtcaaca 29112320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 219
Target Start/End: Complemental strand, 35839444 - 35839354
Alignment:
Q  130 cgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacaca 219  Q
    |||||||||||||  |||||||| |||||||  ||||||||| | || |||||||||||    ||||| |||||||||||| |||||||||    
T  35839444 cgaagttttcctcggtagttaactgcagccggttccataattcggcaattaactgtcgaaaggcatttcagtaaattactagtgtgacaca 35839354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 12027464 - 12027423
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttca 107  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||    
T  12027464 caggtttgaggtttcctcggcagttaactgccgaagttttca 12027423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 34508684 - 34508628
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagttta 125  Q
    |||||||||||| ||| ||||||||| || || ||||| ||||||||| ||||||||    
T  34508684 gtttgaggtttcctcgacagttaactgccaaagttttccgttttcctcggtagttta 34508628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 207
Target Start/End: Original strand, 38266097 - 38266197
Alignment:
Q  108 gttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttagtaaatta 206  Q
    |||||||||  |||||||||| ||||||||||||   |||||||| |||| ||  ||||||||| | |||||||||| |||||  ||||| ||||| |||    
T  38266097 gttttcctcgatagtttactgccgaagttttccttggtagttaactgcagtcggttccataattcggcagttaactgccgagggacatttgagtaattta 38266196  T
Q  207 c 207  Q
    |    
T  38266197 c 38266197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 39173095 - 39173131
Alignment:
Q  80 cttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  39173095 cttcggcagttaactgccgaagttttcagttttcctc 39173131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 707 - 510
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| |||| ||||||||||||||||||||| ||||||||||               |||||||||||||||| ||||||||||||| |||||    
T  707 atgcataaaacgttgagaattgttgttgataatttatgatttttatcaa--------aaaaaaatcaggtttgaggtttcctcggcagttaactgccgaa 616  T
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataatt-gacagttaactgtcgaggatcattttag 199  Q
     ||||||| ||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||| ||||||||| | |||||||||| |||    ||||||||    
T  615 gttttcagcttttctcagtagtttactgccgaagtttttctcgatagttaactgcagccgattccataattcggcagttaactgccga--tacattttag 518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 69 - 240
Target Start/End: Complemental strand, 8679679 - 8679507
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccata 168  Q
    |||||||||||| ||||||||||| | ||||| ||||||||||||||| ||||||||||||||||| |||||||  |||||||| ||||||   ||||||    
T  8679679 gtttgaggtttcctcggcagttaattgccgaagttttcagttttcctcggtagtttactgtcgaagatttcctcggtagttaactgcagccagttccata 8679580  T
Q  169 att-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    ||| | |||||||||| |||||  ||||| |||||||||||  |||  | | |||||| ||||||||||||||    
T  8679579 attcggcagttaactgccgagggacatttcagtaaattactcgtgtttctcggccaatgcatatgtgtcaaca 8679507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 222
Target Start/End: Original strand, 8680197 - 8680354
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| |||||| |||||| ||||| ||||||||||||||| | ||||||||| ||||||||||||| ||||||||| ||||||   |||    
T  8680197 caggtttgaggtttcctcggcaattaactgccgaagttttcagttttcctcggaagtttactgccgaagttttcctcgatagttaactgcagcctgttcc 8680296  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagcc 222  Q
    |||||| | |||||||||| ||| |  |||||  ||||||||||  ||||||||||||    
T  8680297 ataattcggcagttaactgccgaagggcatttgggtaaattactcgtgtgacacagcc 8680354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 20509502 - 20509588
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||  ||||||||    
T  20509502 caggtttgaggtttcctcggcagttaactatcgaaattttcagttttcctcggtagtttactgccgaagttttcctcggtagttaac 20509588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 3892395 - 3892534
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| |||||||||||||||  |||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  3892395 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcgatagtttactgccgaagttttcctcggcagttaactgcagccggtttcataa 3892494  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || | |||||||||| |||||  ||||| ||||| |||||    
T  3892495 ttcggcagttaactgccgagggacatttgagtaatttact 3892534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 3891604 - 3891511
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||||||| | ||||||||||| ||||| ||| ||||||||||| ||||||||||| | |||||||||||   ||||||| |||||||    
T  3891604 caggtttgaggtttccttggcagttaactgccgaagttt-cagttttcctcggtagtttactgccaaagttttcctcggcagttaactgcagccg 3891511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 41066003 - 41065930
Alignment:
Q  69 gtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    |||||||||||| ||||||||||||| ||||| ||||||||||| ||| | ||||  ||| |||||||||||||    
T  41066003 gtttgaggtttcctcggcagttaactgccgaagttttcagtttttctcgggagttacctgccgaagttttcctc 41065930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 35651569 - 35651625
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtt 123  Q
    |||||||||||||| || |||||||||| ||||| ||||||||||||||| ||||||    
T  35651569 aggtttgaggtttcctcagcagttaactgccgaagttttcagttttcctcggtagtt 35651625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 42912251 - 42912202
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    |||||||||||||| ||||||||||||| | ||| |||||||||||||||    
T  42912251 aggtttgaggtttcctcggcagttaactgcagaagttttcagttttcctc 42912202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 238
Target Start/End: Original strand, 13950518 - 13950556
Alignment:
Q  200 taaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  13950518 taaattactaatgtgacacaaccaatgcatatgtgtcaa 13950556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Complemental strand, 18563442 - 18563406
Alignment:
Q  200 taaattactaatgtgacacagccaatacatatgtgtc 236  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  18563442 taaattactaatgtgacacaaccaatgcatatgtgtc 18563406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 41066542 - 41066594
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcag 118  Q
    ||||||||||||||| ||| ||||||||| ||||| |||||| |||| |||||    
T  41066542 caggtttgaggtttcctcgacagttaactgccgaagttttcaatttttctcag 41066594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 15545849 - 15545725
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    |||| |||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||  ||     
T  15545849 cagggttgaggtttcctcggcagttaactgccgaagttttcagtttttctcagtagtttactgccgaagttttcctcagtagttaactgcagccgcttct 15545750  T
Q  166 ataatt-gacagttaactgtcgagg 189  Q
    || ||| |||||||||||| |||||    
T  15545749 attattcgacagttaactgccgagg 15545725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 70 - 184
Target Start/End: Original strand, 2110410 - 2110525
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||  ||||||| |||||||| | |||||    
T  2110410 tttgaggtttcctcggcagttaactgccgaatttttcagttttcctcggtagtttactgccgaagttttcctcagcagttaactgcagccgatttcataa 2110509  T
Q  170 tt-gacagttaactgt 184  Q
    || | |||||||||||    
T  2110510 ttcggcagttaactgt 2110525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15871966 - 15871737
Alignment:
Q  1 atgcataaaacattgataattgttgttgataatttatggtttttatcaacnnnnnnnnnnnnnntcaggtttgaggtttcttcggcagttaactaccgaa 100  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||              ||||| ||||||| |  ||||||||||||| |||||    
T  15871966 atgcataaaacgttgagaattgttgttgataatttatggtttttatcaacaaaaaaaaaaa---tcagggttgaggtcttctcggcagttaactgccgaa 15871870  T
Q  101 attttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataattga-cagttaactgtcgaggatcattttag 199  Q
     |||||| |||||||| |||||||||||| ||||||||||||| ||||||||  ||||     |||||||| | |||||||||| ||||   ||||||||    
T  15871869 gttttcaattttcctcggtagtttactgttgaagttttcctcagtagttaactacagc-----ccataattcagcagttaactgccgagcggcattttag 15871775  T
Q  200 taaattactaatgtgacacagccaatacatatgtgtcaa 238  Q
    |||||||||| || ||| || ||||| ||||||||||||    
T  15871774 taaattactagtg-gacccaaccaatgcatatgtgtcaa 15871737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 240
Target Start/End: Original strand, 455995 - 456170
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactcc 165  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||| |||||| |||||||||||  |||||| || |   |||||||| ||||||   |||    
T  455995 caggtttgaggtttcctcggcagttaactgccgaagttttcagtgttcctcggtagtttactgctgaagttctcttgggtagttaactgcagccagttcc 456094  T
Q  166 ataatt-gacagttaactgtcgaggatcattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||| | |||||||||| |||||  |||||  ||||||||||  |||  | |||||||| ||||||||||||||    
T  456095 ataattcggcagttaactgccgaggggcatttgggtaaattactcgtgtttctcagccaatgcatatgtgtcaaca 456170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 208
Target Start/End: Original strand, 13164215 - 13164354
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||   ||||||| |||||||  | |||||    
T  13164215 tttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctcgggagttaactgcagccggtttcataa 13164314  T
Q  170 tt-gacagttaactgtcgaggatcattttagtaaattact 208  Q
    || |  ||||||||| |||||  ||||| ||||| |||||    
T  13164315 ttcggtagttaactgccgaggggcatttgagtaatttact 13164354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 2109664 - 2109588
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  2109664 caggtttgaggttgcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcctc 2109588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 6760823 - 6760899
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||| |||||| ||||||||||| |||||||||||||    
T  6760823 caggtttgaggtttcctcggcagttaactgccgaagttttcagtgttcctcggtagtttactgccgaagttttcctc 6760899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 7677967 - 7677896
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttt 137  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  7677967 caggtttgaggtttcctcggcagttaactaccgaagttttcagttttcctcggtagtttactgccgaggttt 7677896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 206
Target Start/End: Complemental strand, 17337773 - 17337629
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgac 162  Q
    ||||||||||||||| ||||||||||||| ||||| |||||   ||| |||||| | ||||||||| |||||||||||||  |||||||| ||||||       
T  17337773 caggtttgaggtttcctcggcagttaactgccgaagttttcagtagtattcctcgggagtttactgccgaagttttcctcggtagttaactgcagccagt 17337674  T
Q  163 tccataatt-gacagttaactgtcgaggatcattttagtaaatta 206  Q
    ||| ||||| | ||||||||||||||||  |||||  ||||||||    
T  17337673 tccttaattcggcagttaactgtcgaggggcatttgggtaaatta 17337629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 32396034 - 32395946
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctcaatagttaa 151  Q
    ||||||||||||||| ||||||||||||| |||||||||||   ||| |||||| |||||||||||  |||||||||||| ||||||||    
T  32396034 caggtttgaggtttcctcggcagttaactgccgaaattttcagtagtattcctcggtagtttactgcagaagttttcctcgatagttaa 32395946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 32396809 - 32396929
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccgactccataa 169  Q
    ||||||||||| ||||||||||||| ||||| |||| ||| |||||| | ||||||||| ||||||||||||    ||||||| |||||||  |||||||    
T  32396809 tttgaggtttcctcggcagttaactgccgaagtttttagtattcctcgggagtttactgccgaagttttcctagggagttaactgcagccgtttccataa 32396908  T
Q  170 tt-gacagttaactgtcgagg 189  Q
    || | |||||||||| |||||    
T  32396909 ttcggcagttaactgccgagg 32396929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 25554826 - 25554752
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcct 141  Q
    ||||||||||||||| ||||||||||||| ||| || |||||||||||||| || |||||||  ||||||||||||    
T  25554826 caggtttgaggtttcctcggcagttaactgccg-aagtttcagttttcctcggttgtttacttccgaagttttcct 25554752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 32552606 - 32552539
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaa 133  Q
    ||||||||| ||||| |||| |||||||| ||||||||||| ||||||||| ||||||||||| ||||    
T  32552606 caggtttgaagtttcctcggtagttaactgccgaaattttccgttttcctcggtagtttactgccgaa 32552539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 117354 - 117304
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    ||||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  117354 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 117304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 8708070 - 8708021
Alignment:
Q  67 aggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctc 116  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||||||    
T  8708070 aggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctc 8708021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 24991279 - 24991327
Alignment:
Q  192 cattttagtaaattactaatgtgacacagccaatacatatgtgtcaaca 240  Q
    |||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  24991279 cattttagtaaattactactgtgacacagccaatgcatatctgtcaaca 24991327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 6760107 - 6760049
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactg 128  Q
    ||||||||||| ||||||||||| | ||||| |||||| ||||||||  ||||||||||    
T  6760107 tttgaggtttcctcggcagttaattgccgaagttttcaattttcctcgctagtttactg 6760049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 69172 - 69258
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||| || | |||||||    
T  69172 caggtttgaggtttcctcggcagttaactgccgaagttttcagttttcctcggtagtttactgccgaagttttcttcgacagttaac 69258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 68496 - 68406
Alignment:
Q  70 tttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaaccgcagccg 160  Q
    ||||||||||| |||||||||||||  |||| ||||||||||| ||| ||||||||||  |||||||||||||  |||||||| |||||||    
T  68496 tttgaggtttcctcggcagttaactgtcgaagttttcagtttttctcggtagtttactaccgaagttttcctcggtagttaactgcagccg 68406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1644 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1644
Description:

Target: scaffold1644; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 152
Target Start/End: Complemental strand, 1233 - 1147
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttcagttttcctcagtagtttactgtcgaagttttcctcaatagttaac 152  Q
    ||||||||||||||  ||||||||||||| | ||| ||||||||||| |||  |||||||||||| |||||||||||  ||||||||    
T  1233 caggtttgaggtttactcggcagttaactgctgaagttttcagtttttctcgctagtttactgtcaaagttttcctccgtagttaac 1147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 12533 - 12454
Alignment:
Q  66 caggtttgaggtttcttcggcagttaactaccgaaattttc---agttttcctcagtagtttactgtcgaagttttcctc 142  Q
    ||||||||||||||| ||||||||||||| || || |||||   ||| |||||| |||||||| || |||||||||||||    
T  12533 caggtttgaggtttcctcggcagttaactgccaaagttttcagtagtattcctcggtagtttattgccgaagttttcctc 12454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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