View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7169_low_29 (Length: 262)

Name: NF7169_low_29
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7169_low_29
NF7169_low_29
[»] chr2 (6 HSPs)
chr2 (17-246)||(27725093-27725322)
chr2 (59-246)||(27736341-27736528)
chr2 (59-244)||(27717751-27717936)
chr2 (77-247)||(27596171-27596341)
chr2 (77-247)||(27590123-27590293)
chr2 (40-187)||(27084809-27084953)
[»] chr8 (1 HSPs)
chr8 (59-247)||(14682723-14682911)
[»] chr1 (2 HSPs)
chr1 (41-247)||(19226179-19226384)
chr1 (40-216)||(19220618-19220794)
[»] chr5 (1 HSPs)
chr5 (80-149)||(39725468-39725537)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 27725322 - 27725093
Alignment:
Q  17 tgtttttccacataaacattcagattcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725322 tgtttttccacataaacattcagattcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctc 27725223  T
Q  117 tattttttcaaaactacctttgaaatctgtgaataggtttacttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttt 216  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  27725222 tattttttcaaaactacctttgaaatctgcgaataggtttacttgtttaggcaaatcttggtctactttatttgaaaacccttatttcatcaacatgttt 27725123  T
Q  217 tacaaaaatgttgtttccaaatatcattca 246  Q
    ||||||||| ||||||||||||||||||||    
T  27725122 tacaaaaatattgtttccaaatatcattca 27725093  T

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Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 59 - 246
Target Start/End: Complemental strand, 27736528 - 27736341
Alignment:
Q  59 ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttac 158  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27736528 ctatggctgcaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttttctattttttcaaaactacctttgaaatctgtgaataggtttac 27736429  T
Q  159 ttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacaaaaatgttgtttccaaatatcattca 246  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  27736428 ttgtttaggcaaatcttggtctactttatttgaaaacccttatttcatcaacatgttttacaaaaatattgtttccaaacatcattca 27736341  T

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Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 27717936 - 27717751
Alignment:
Q  59 ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttac 158  Q
    |||||||||||||||| ||||||||||||   |||||||| || ||| ||||||||||||| ||||||||||||||| ||||||| |||||| |||||||    
T  27717936 ctatggctccaacaaatcaaaaggttagtcttcatgttcccgaagatgtcgtcttctctatattttcaaaactacctctgaaatccgtgaatcggtttac 27717837  T
Q  159 ttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacaaaaatgttgtttccaaatatcatt 244  Q
     ||| ||   ||||||||| |||| |||||||||||| |||||||||| |||||||||| |||| || | ||||||||||||||||    
T  27717836 atgtgtatccaaatcttggactactttatttgaaaactcttatttcatgaacatgttttccaaatatatggtttccaaatatcatt 27717751  T

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Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 27596341 - 27596171
Alignment:
Q  77 aaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttacttgtttaggtaaatcttg 176  Q
    |||||||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| ||   |||  ||     
T  27596341 aaaaggttagtatctatgttcctgaagatatcgtcttctctattctttcaaaactacctttgaaatctgtgaaacggtttacttgtgtaaacaaacttta 27596242  T
Q  177 gtctacattatttgaaaacccttatttcatcaacatgttttacaaaaatgttgtttccaaatatcattcat 247  Q
      ||   ||||||||||| ||||||||  | |||||||||||||||||| | |||||||||||| ||||||    
T  27596241 cactcttttatttgaaaatccttattttgtgaacatgttttacaaaaatatggtttccaaatataattcat 27596171  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 27590293 - 27590123
Alignment:
Q  77 aaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttacttgtttaggtaaatcttg 176  Q
    ||||||||| || | |||||| |||  ||||||||||||||||| |||| ||||||||||| |||||||||||  ||||||||||| ||   |||  |||    
T  27590293 aaaaggttaatatctatgttcttgaatatatcgtcttctctattctttcgaaactacctttaaaatctgtgaagcggtttacttgtataaacaaacattg 27590194  T
Q  177 gtctacattatttgaaaacccttatttcatcaacatgttttacaaaaatgttgtttccaaatatcattcat 247  Q
    | ||   ||||||||||||||||||||  | |||||||||||||| ||| | |||||||||||| ||||||    
T  27590193 gactcttttatttgaaaacccttattttgtgaacatgttttacaataatatggtttccaaatataattcat 27590123  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 27084953 - 27084809
Alignment:
Q  40 attcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttga 139  Q
    ||||||||| |||| | ||||||  |||||||||| | ||||||||||   |||||||| || ||||| || ||||||||||||  || |||||||||||    
T  27084953 attcagaagtttgagatatctattcctccaacaaatcgaaaggttagtcttcatgttcccgaagatattgt-ttctctattttt--aagactacctttga 27084857  T
Q  140 aatctgtgaataggtttacttgtttaggtaaatcttggtctacattat 187  Q
    |||| |||||||||||||| |||||| | ||||||||| |||| ||||    
T  27084856 aatccgtgaataggtttacatgtttatgcaaatcttggactactttat 27084809  T

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Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 59 - 247
Target Start/End: Complemental strand, 14682911 - 14682723
Alignment:
Q  59 ctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaataggtttac 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||    
T  14682911 ctatggctccaacaaaccaaaaggttagtaaccatgttcctgaagatatcgtcttttctattttttcaaaactacctttaaaatctttgaatcggtttac 14682812  T
Q  159 ttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacaaaaatgttgtttccaaatatcattcat 247  Q
    ||||||||| || |||||| ||   |||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||||||||    
T  14682811 ttgtttaggcaagtcttggactcttttatttgaaaacccttattttatgaacatgttttacaaaaatattgttttcaaatatcattcat 14682723  T

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Target: chr1 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 247
Target Start/End: Complemental strand, 19226384 - 19226179
Alignment:
Q  41 ttcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaa 140  Q
    |||||||| |||| | ||||||||||||||| ||  |||||||||||| | ||||||| ||||| |||   ||||| ||||| |||||||||||||||||    
T  19226384 ttcagaagtttgagaaatctatggctccaacgaatgaaaaggttagtatctatgttccagatgacatcacgttctc-attttgtcaaaactacctttgaa 19226286  T
Q  141 atctgtgaataggtttacttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttttacaaaaatgttgtttccaaatat 240  Q
    |||||| ||| | ||||||||| || | ||||| ||| ||   || ||||||||| |||||||||| |||||||||||||||| | |  |||||||||||    
T  19226285 atctgtaaatcgatttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgttttacaaaactatgttttccaaatat 19226186  T
Q  241 cattcat 247  Q
    |||||||    
T  19226185 cattcat 19226179  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 19220618 - 19220794
Alignment:
Q  40 attcagaagattgatagatctatggctccaacaaaccaaaaggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttga 139  Q
    ||||||||| |||| | ||||||||||||||| ||  ||||||| |||| | ||||||| ||||| |||   ||||| ||||| ||||||||||||||||    
T  19220618 attcagaagtttgagaaatctatggctccaacgaatgaaaaggtcagtatctatgttccagatgacatcacgttctccattttgtcaaaactacctttga 19220717  T
Q  140 aatctgtgaataggtttacttgtttaggtaaatcttggtctacattatttgaaaacccttatttcatcaacatgttt 216  Q
    ||||||| ||| ||||||||||| || | ||||| ||| ||   || ||||||||| |||||||||| |||||||||    
T  19220718 aatctgtaaatcggtttacttgtgtatgcaaatcgtggactcttttgtttgaaaactcttatttcatgaacatgttt 19220794  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 39725537 - 39725468
Alignment:
Q  80 aggttagtaaccatgttcctgatgatatcgtcttctctattttttcaaaactacctttgaaatctgtgaa 149  Q
    ||||||| || ||||| ||||||||||| |||||||||||| | |||||||| ||||| |||||| ||||    
T  39725537 aggttagcaatcatgtacctgatgatattgtcttctctattctgtcaaaacttcctttcaaatctttgaa 39725468  T

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