View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_31 (Length: 257)
Name: NF7169_low_31
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 52671729 - 52671953
Alignment:
| Q |
15 |
tttggtggtagttcaacaggtgtgagtgtgtgaacctattgtcacacattttctgcaagctatttggagccttgcgaagttaatctaaaaaatgggaaat |
114 |
Q |
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| T |
52671729 |
tttggtggtagttcaacaggtgtgagtgtgtgaacctattgtcacacattttctgcaagctatt-ggagccttgcgaagttaatctaaaaaatgggaaac |
52671827 |
T |
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| Q |
115 |
caaagagagaaaaggaattgagaacagagcaagaaatggttacctgacatttgagatggaaataaatctataaaaggtattcctcttgaaaaaagtgata |
214 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52671828 |
caaagagagaaaaggaattgagaaaagaacaagaaatggttacctgacatttgagatggaaataaatctataaaaggtattcctcttgaaaaaagtgata |
52671927 |
T |
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| Q |
215 |
cgtatcggttaatatgcctaaaaaat |
240 |
Q |
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| T |
52671928 |
cgtatcggttaatatgcctaaaaaat |
52671953 |
T |
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