View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_37 (Length: 242)
Name: NF7169_low_37
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1977489 - 1977251
Alignment:
| Q |
1 |
gatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaacatg |
100 |
Q |
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|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |
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| T |
1977489 |
gatgaatggaatcatagactccgagaaagatgcaaagattctaagagaaaaagggattattctaaatcacttaaagagtgatcaagaagtggctaacatg |
1977390 |
T |
|
| Q |
101 |
tggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataatacaatgaagatca |
200 |
Q |
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| T |
1977389 |
tggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataatacaatgaagatca |
1977290 |
T |
|
| Q |
201 |
agatttggaaatttatgaagtcttatgtgtttggttcat |
239 |
Q |
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| T |
1977289 |
agatttggaaatttatgaagtcttatgtgtttggttcat |
1977251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1984410 - 1984172
Alignment:
| Q |
1 |
gatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaacatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||| |
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| T |
1984410 |
gatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaagagtgatcaagaagtggctaacatg |
1984311 |
T |
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| Q |
101 |
tggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataatacaatgaagatca |
200 |
Q |
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| T |
1984310 |
tggaatggaatgagcaagttattgagattgtcaagggtaccattcttggataagactattgaagatgtaaaccagagttataataatacaatgaagatca |
1984211 |
T |
|
| Q |
201 |
agatttggaaatttatgaagtcttatgtgtttggttcat |
239 |
Q |
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| T |
1984210 |
agatttggaaatttatgaagtcttatgtgtttggttcat |
1984172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1948917 - 1949155
Alignment:
| Q |
1 |
gatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaacatg |
100 |
Q |
| |
|
|||||||||||||||||| || || | ||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| || | ||| |
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| T |
1948917 |
gatgaatggaattatagactcggaagatgatgcgaagattctaagagaaaaagggattattttaaatcacttgaaaagtgataaagaagttgctgatatg |
1949016 |
T |
|
| Q |
101 |
tggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaacaagagttataataatacaatgaagatca |
200 |
Q |
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||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| || ||||||| | | |
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| T |
1949017 |
tggaatggaatgagcaagtcattgagattatcaagggtattgttcttggataagactattgaagatgttaacaagttttataatagtagaatgaaggtga |
1949116 |
T |
|
| Q |
201 |
agatttggaaatttatgaagtcttatgtgtttggttcat |
239 |
Q |
| |
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| || | |||||||||||||||||||||||||||||||| |
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| T |
1949117 |
aaatgttgaaatttatgaagtcttatgtgtttggttcat |
1949155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 5625937 - 5626108
Alignment:
| Q |
1 |
gatgaatggaattatagattccgagaacgatgcaaagattctaagagaaaaagggattattctaaatcacttaaaaagtgataaagaagtggccaacatg |
100 |
Q |
| |
|
|||||||||||| ||||| | ||| | ||||||| |||||| |||||||||||| ||||| | || || |||||||||||| |||| ||||| || || |
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| T |
5625937 |
gatgaatggaatcatagacactgaggaagatgcaaggattcttagagaaaaaggggttattttgaaccatttaaaaagtgatcaagaggtggctaatttg |
5626036 |
T |
|
| Q |
101 |
tggaatggaatgagcaagtcattgagattgtcaagggtaccattcttggataagactattgaagatgttaac |
172 |
Q |
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||||||||||||| ||| || | | |||| ||||||| ||||||||||||||| ||||| ||||||||| |
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| T |
5626037 |
tggaatggaatgaacaaatccatcaaattgacaagggttccattcttggataaggtcattgaggatgttaac |
5626108 |
T |
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