View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_4 (Length: 605)
Name: NF7169_low_4
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 33401032 - 33401430
Alignment:
| Q |
13 |
aatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaatgtatagtttttcctcac |
112 |
Q |
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| T |
33401032 |
aatataaacaacgtcaacaaaaaatatcttcacccataaaagcaatgacagaaaaaccataatgtataaagatgatgaagaatgtatagtttttcctcac |
33401131 |
T |
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| Q |
113 |
cttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatccccaagaaatcattttttccac |
212 |
Q |
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| T |
33401132 |
cttggcttcatcaaatacataagtaggaaaactagagagtacaccaaggaaagtccaccaatgagaatatatgcaatccccaagaaatcattttttccac |
33401231 |
T |
|
| Q |
213 |
caatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactacagttatttcatcgttagcttc |
312 |
Q |
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| T |
33401232 |
caatccatgttgtggttgatagaatcacactctttgttcctccaaattgatatgtattataattgttctctattactaccgttatttcatcgttagcttc |
33401331 |
T |
|
| Q |
313 |
aaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactgtttcat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33401332 |
aaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcactcaactgtttcat |
33401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 485 - 588
Target Start/End: Original strand, 33401504 - 33401607
Alignment:
| Q |
485 |
atatagtgacgaagatatataaatatttacttacaggtatgctctcattaagtctagnnnnnnnaattaaaccgccagtctgaaaatttttaggataaac |
584 |
Q |
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| T |
33401504 |
atatagtgacaaagatatataaatatttacttacaggtatgctctcattaagtctagcacccccaattaaactgccagtctgaaaatttttaggataaac |
33401603 |
T |
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| Q |
585 |
atca |
588 |
Q |
| |
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|||| |
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|
| T |
33401604 |
atca |
33401607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 299 - 405
Target Start/End: Complemental strand, 43601010 - 43600904
Alignment:
| Q |
299 |
tcatcgttagcttcaaggtcgacttcaatcttcccgtataattttctgaatgtaggcagtgctgctgttctcatccatacaatcagatcctcttgttcac |
398 |
Q |
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||||||||| ||||||| ||| || |||||||| || | ||||||||| || || | |||||||||||||||||| |||||||||||||||||||||| |
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| T |
43601010 |
tcatcgttaacttcaagatcggactctatcttcccatacagttttctgaacgttggtaatgctgctgttctcatccaaacaatcagatcctcttgttcac |
43600911 |
T |
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| Q |
399 |
tcaactg |
405 |
Q |
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||||||| |
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|
| T |
43600910 |
tcaactg |
43600904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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