View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_low_5 (Length: 577)
Name: NF7169_low_5
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 35520002 - 35520561
Alignment:
| Q |
1 |
aataagagatggagaaagttgcacggtgcctgaaattgtggcaatggttttctggccattaggtaagacataaacacatgagaaattgtgtgataagaga |
100 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520002 |
aataagggattgagaaagttgcacggtgcctgaaattgtggcaatggttttatggccattaggtaagacataaacacatgagaaattgtgtgataagaga |
35520101 |
T |
|
| Q |
101 |
taaagttatgtaaggaatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcaaagatcttaccaaaagtgggagaagagaatgaacttaa |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
35520102 |
caaaattatgtaaggaatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcagagatcttaccaaaagtgggagaagaggatgaacttaa |
35520201 |
T |
|
| Q |
201 |
agctgcaggattagatataacagagttgatagaaggttgattgggactaggatttgagggtgtcgatgaagcttgtaatgttgaatgctgtagaagctgt |
300 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
35520202 |
agctgcaggattagatataacagagttgacaaaaggttgattgggactaggattcgagggtcttgatgaagcttgtaatgttgaatgctgtagaagctgt |
35520301 |
T |
|
| Q |
301 |
aaaatatgattataccgctcttgaatggtgttgatagtagctggagtgggattggtgtggctttccctttgtgggccattagaagcagtagcagcaacat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35520302 |
aaaatatgattataccgctcttgaatggtgttgatagtagctggagtgcgattggtgtggctttctctttgtgggccattagaagcagtagcagcaacat |
35520401 |
T |
|
| Q |
401 |
ttattgacttagagtttttatgttgataaccaggtggatagacatgtaaggcaaaacatgtgtcaatagtatgattgcgtctaccacaattagtgcaggt |
500 |
Q |
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| T |
35520402 |
ttattgacttagagtttttctgttgataaccaggtggatagacatgtaaggcaaaccatgtgtcaatagtatgattgcgtctaccacaattagtgcaggt |
35520501 |
T |
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| Q |
501 |
tcgattattagaaccacgacctccataatgacttccacggcctctaccgcgaccaccatg |
560 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
35520502 |
tcgattattagaaccacgacctccataatgacttccacgacctctgccgcgaccaccatg |
35520561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Complemental strand, 33766097 - 33765535
Alignment:
| Q |
1 |
aataagagatggagaaagttgcacggtgcctgaaattgtggcaatggttttctggccattaggtaag-acataaacacatgagaaattgtgtgataagag |
99 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |||||||||||||||||||| |
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| T |
33766097 |
aataagggatggagaaagttgcacggtgcctgaaattgtggcaatggttttctagccattagataaggacataaacacaggagaaattgtgtgataagag |
33765998 |
T |
|
| Q |
100 |
ataaagttatgtaaggaatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcaaagatcttaccaaaagtgggagaagagaatgaactta |
199 |
Q |
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| T |
33765997 |
acaaagttatgtaaggaatgtgtgatatggtcagtggcaccagaatctacaacccagtggtcagagatcttaccaaaagtgggagaagaggatgaactta |
33765898 |
T |
|
| Q |
200 |
aagctgcaggattagatataacagagttgatagaaggttgattgggactaggatttgagggtgtcgatgaagcttgtaatgttgaatgctgtagaagctg |
299 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
33765897 |
aagctgcaggattagatataacagagttgacagaaggttgatttggactaggattcgagggtgttgatgaagcttgtaatgttgaatgttgtagaagctg |
33765798 |
T |
|
| Q |
300 |
taaaatatgattataccgctcttgaatggtgttgatagtagctggagtgggattggtgtggctttccctttgtgggccattagaagcagtagcagcaaca |
399 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
33765797 |
taaaatctgattatactgctcttgaatggtgttgatagtagctggagtgggattggcgtggctttctcattgtggggcattagaagcagtagcagcaaca |
33765698 |
T |
|
| Q |
400 |
tttattgacttagagt--ttttatgttgataaccaggtggatagacatgtaaggcaaaacatgtgtcaatagtatgattgcgtctaccacaattagtgca |
497 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33765697 |
tttattgacttagagtttttttatgttgataaccaggtggatagccatgtaaggaaaaacatgtgtcaatagtatgattgcgtctaccacaattagtgca |
33765598 |
T |
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| Q |
498 |
ggttcgattattagaaccacgacctccataatgacttccacggcctctaccgcgaccaccatg |
560 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33765597 |
ggttcgattattagaaccacgacctccataatgacttccacggcctctgccgcgaccaccatg |
33765535 |
T |
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