View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7169_low_8 (Length: 550)

Name: NF7169_low_8
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7169_low_8
NF7169_low_8
[»] chr2 (6 HSPs)
chr2 (77-535)||(4655333-4655784)
chr2 (255-301)||(31404544-31404590)
chr2 (257-317)||(8921930-8921990)
chr2 (155-211)||(31404460-31404516)
chr2 (7-44)||(4655227-4655264)
chr2 (93-125)||(31403658-31403690)
[»] chr6 (4 HSPs)
chr6 (89-335)||(14339358-14339592)
chr6 (257-309)||(2064508-2064562)
chr6 (262-310)||(32457497-32457545)
chr6 (275-309)||(12733230-12733264)
[»] scaffold0005 (2 HSPs)
scaffold0005 (89-189)||(229155-229255)
scaffold0005 (251-335)||(229306-229393)
[»] chr4 (4 HSPs)
chr4 (89-189)||(14588123-14588223)
chr4 (251-335)||(14587985-14588072)
chr4 (348-443)||(38978744-38978836)
chr4 (258-309)||(51810232-51810285)
[»] chr5 (4 HSPs)
chr5 (89-349)||(31312046-31312295)
chr5 (254-335)||(31362249-31362330)
chr5 (397-441)||(22599058-22599102)
chr5 (89-124)||(31362106-31362141)
[»] chr8 (2 HSPs)
chr8 (77-308)||(36443166-36443388)
chr8 (256-309)||(35203742-35203797)
[»] chr1 (7 HSPs)
chr1 (92-329)||(12024777-12025006)
chr1 (254-335)||(31236492-31236573)
chr1 (110-210)||(31236603-31236703)
chr1 (255-290)||(907574-907609)
chr1 (373-436)||(8034568-8034631)
chr1 (373-438)||(34228431-34228496)
chr1 (260-296)||(26655536-26655572)
[»] chr3 (4 HSPs)
chr3 (251-329)||(41575665-41575743)
chr3 (257-309)||(53687554-53687608)
chr3 (106-211)||(38700665-38700770)
chr3 (138-178)||(20623647-20623687)
[»] chr7 (1 HSPs)
chr7 (254-316)||(3473753-3473817)


Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 77 - 535
Target Start/End: Original strand, 4655333 - 4655784
Alignment:
Q  77 tatatgggaataattaaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagt 176  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4655333 tatatgggaattattaaaatattttttatttttaactaaaattaccttggggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagt 4655432  T
Q  177 caatggaaatgtataatcaattatcttgaatttttgaatttt-aaggtatgtaatttaannnnnnnnnnatgctaaatcttgtgtttaatgcttattata 275  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||          |||||||||||||||||||||| ||||||||    
T  4655433 caatggaaatgtataatcaattatcttgaattttttaatttttaaggtatgtaatttaattttttttt-atgctaaatcttgtgtttaatgtttattata 4655531  T
Q  276 acataaattttgtgtttatattatagtttatttttctggcccgcccaaataattctttcttggctccaccattgtttaatgtgacacttaaaccataagg 375  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||| | ||||||||||||     
T  4655532 acataaattttgtgtttatattatagtttatttttctggcccacccaaataattttttcttgactccaccattgtttgatgtgatatttaaaccataaga 4655631  T
Q  376 ctcttccacttaatgaattaatcttttaggttggacttttctcataggcttaagtcctaataattgttatttttaccacggagaaggttaactataaatt 475  Q
     ||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  4655632 ttctcccacttaataaattaatcttttaggttggacttttctcgtaggcttaagtcctaataattgttatttttaccacggagaaggttaac-------t 4655724  T
Q  476 ggattaaggtgttctattaattggtgatagatggattggactctattctcatgagcttaa 535  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4655725 ggattaaggtgttctactaattggtgatagatggattggactctattctcatgagcttaa 4655784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 31404544 - 31404590
Alignment:
Q  255 ttgtgtttaatgcttattataacataaattttgtgtttatattatag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31404544 ttgtgtttaatgcttattataacataaattttgtgtttatattatag 31404590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 8921990 - 8921930
Alignment:
Q  257 gtgtttaatgcttattataacataaattttgtgtttatattatagtttatttttctggccc 317  Q
    ||||||| ||||||||| ||||||| |||||| | ||||| ||||||||||||| ||||||    
T  8921990 gtgtttagtgcttattaaaacataatttttgtatatatataatagtttatttttgtggccc 8921930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 31404460 - 31404516
Alignment:
Q  155 ttttattatcacaatttcaagtcaatggaaatgtataatcaattatcttgaattttt 211  Q
    |||||||||| |||||| |||||||| ||||||||||   |||||||||||||||||    
T  31404460 ttttattatcccaattttaagtcaatcgaaatgtataggtaattatcttgaattttt 31404516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 4655227 - 4655264
Alignment:
Q  7 tttggtgttaggaattcatcggtaaataaaagtgtttg 44  Q
    |||| |||||||||| ||||||||||||||||||||||    
T  4655227 tttgatgttaggaatccatcggtaaataaaagtgtttg 4655264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 31403658 - 31403690
Alignment:
Q  93 aaatatttttgatttttaactaaaattaccttg 125  Q
    |||||| ||||||||||||||||||||||||||    
T  31403658 aaatatctttgatttttaactaaaattaccttg 31403690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 89 - 335
Target Start/End: Original strand, 14339358 - 14339592
Alignment:
Q  89 attaaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgt 188  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| ||| | ||| ||||||||||||||||||||| |||||||    
T  14339358 attaaaatatttttgatttttaactaaaattacctcgtggtccaccctcttctccatctcagtatgattt-ttatcacaatttcaagtcaatcgaaatgt 14339456  T
Q  189 ataatcaattatcttgaatttttgaattttaaggtatgtaatttaannnnnnnnnnatgctaaatcttgtgtttaatgcttattataacataaattttgt 288  Q
    |||   |||||||||| ||       |||||||||||  ||||||           |||   |||||| ||||||||| |||||||||||||||||||||    
T  14339457 atagataattatcttgtat-------ttttaaggtatacaattta----tttttttatggacaatcttttgtttaatgtttattataacataaattttgt 14339545  T
Q  289 gtttatattatagtttatttttctggcccgcccaaataattctttct 335  Q
    || |||||||| |||||||| | |||||| |||||| |||| |||||    
T  14339546 gtatatattatggtttatttctgtggcccacccaaacaattttttct 14339592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 2064562 - 2064508
Alignment:
Q  257 gtgtttaatgcttattataacataaattttgtgtttatat--tatagtttatttt 309  Q
    ||||||||||||||||||||| | ||||||||||||||||  |||||||||||||    
T  2064562 gtgtttaatgcttattataactttaattttgtgtttatataatatagtttatttt 2064508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 32457545 - 32457497
Alignment:
Q  262 taatgcttattataacataaattttgtgtttatattatagtttattttt 310  Q
    |||||||||||| |||||||||||||||| ||| ||||| |||||||||    
T  32457545 taatgcttattaaaacataaattttgtgtatattttataatttattttt 32457497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 12733264 - 12733230
Alignment:
Q  275 aacataaattttgtgtttatattatagtttatttt 309  Q
    |||||||||||||||| ||||||||||||||||||    
T  12733264 aacataaattttgtgtatatattatagtttatttt 12733230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 189
Target Start/End: Original strand, 229155 - 229255
Alignment:
Q  89 attaaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgt 188  Q
    |||||||||| ||| |||||||||||||||||||||| || ||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||    
T  229155 attaaaatatctttaatttttaactaaaattaccttgcggcccaccctcttctccatctcagtacgttttattatcacaatttcaagtcaatcgaaatgt 229254  T
Q  189 a 189  Q
    |    
T  229255 a 229255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 335
Target Start/End: Original strand, 229306 - 229393
Alignment:
Q  251 aatcttgtgtttaatgcttattataacataaattttgtgtttatatt---atagtttatttttctggcccgcccaaataattctttct 335  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||    |||||||||||| || |||  |||||||||| |||||    
T  229306 aatcttgtgtttaatgcttgttataacataaattttgtgtttacattgtactagtttatttttgtgacccatccaaataattttttct 229393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 89 - 189
Target Start/End: Complemental strand, 14588223 - 14588123
Alignment:
Q  89 attaaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgt 188  Q
    |||||||||| ||| |||||||||||||||||||||| || ||||| ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||    
T  14588223 attaaaatatctttaatttttaactaaaattaccttgcggcccaccctcttctccatctcagtacgttttattatcacaatttcaagtcaatcgaaatgt 14588124  T
Q  189 a 189  Q
    |    
T  14588123 a 14588123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 14588072 - 14587985
Alignment:
Q  251 aatcttgtgtttaatgcttattataacataaattttgtgtttatatt---atagtttatttttctggcccgcccaaataattctttct 335  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |||    |||||||||||| || |||  |||||||||| |||||    
T  14588072 aatcttgtgtttaatgcttgttataacataaattttgtgtttacattgtactagtttatttttgtgacccatccaaataattttttct 14587985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 443
Target Start/End: Original strand, 38978744 - 38978836
Alignment:
Q  348 tgtttaatgtgacacttaaaccataaggctcttccacttaatgaattaatcttttaggttggacttttctcataggcttaagtcctaataattgtt 443  Q
    ||||| |||||  ||||||||||| |||||||||||| ||||| |||| |||||| ||||||||||   |||| |||||||||||||| |||||||    
T  38978744 tgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttggactt---tcatgggcttaagtcctaacaattgtt 38978836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 51810285 - 51810232
Alignment:
Q  258 tgtttaatgcttattataacataaattt--tgtgtttatattatagtttatttt 309  Q
    ||||||||||||||||||||||||||||  | | | ||||||||||||||||||    
T  51810285 tgtttaatgcttattataacataaattttatttatatatattatagtttatttt 51810232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 89 - 349
Target Start/End: Original strand, 31312046 - 31312295
Alignment:
Q  89 attaaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgt 188  Q
    |||||||||| ||||| |||||||||||||||||||  ||  |||  ||||||| ||||| ||| ||||||  ||| ||||||||||||||| |||||||    
T  31312046 attaaaatatctttgagttttaactaaaattaccttacggctcactctcttctccatctcagtatgttttacgatctcaatttcaagtcaattgaaatgt 31312145  T
Q  189 ataatcaattatcttgaatttttgaattttaaggtatgtaatttaannnnnnnnnnatgctaaatcttgtgtttaatgcttattataacataaattttgt 288  Q
    |||   |||||||||||||||||       ||  |||  |||||||          ||| | ||||||||||||||||||||||||| ||||||||||||    
T  31312146 ataggtaattatcttgaattttt-------aacatatacaatttaattttttg---atgatcaatcttgtgtttaatgcttattatatcataaattttgt 31312235  T
Q  289 gtttatattatagtttatttttctggcccgcccaaataattctttcttggctccaccattg 349  Q
    |||||||||||||||||||||| || |||  ||||| |||| |||| ||||||||||||||    
T  31312236 gtttatattatagtttatttttttgacccatccaaacaattttttc-tggctccaccattg 31312295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 335
Target Start/End: Original strand, 31362249 - 31362330
Alignment:
Q  254 cttgtgtttaatgcttattataacataaattttgtgtttatattatagtttatttttctggcccgcccaaataattctttct 335  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | || | |||||| |||| |||||    
T  31362249 cttgtgtttagtacttattataacataaattttgtgtttatattatagtttatttttgttgcgcacccaaacaattttttct 31362330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 22599102 - 22599058
Alignment:
Q  397 tcttttaggttggacttttctcataggcttaagtcctaataattg 441  Q
    |||||||||||| ||||||||||| |||||||||||||| |||||    
T  22599102 tcttttaggttgaacttttctcatgggcttaagtcctaacaattg 22599058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 124
Target Start/End: Original strand, 31362106 - 31362141
Alignment:
Q  89 attaaaatatttttgatttttaactaaaattacctt 124  Q
    |||||||||| |||||||||||||||||||||||||    
T  31362106 attaaaatatgtttgatttttaactaaaattacctt 31362141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 77 - 308
Target Start/End: Original strand, 36443166 - 36443388
Alignment:
Q  77 tatatgggaa-taattaaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaag 175  Q
    |||||||||| | |||||||||| ||||||||||||||||||||| |||| || ||||  | ||||| ||||| |||| |||||||||||||||||||||    
T  36443166 tatatgggaaattattaaaatatctttgatttttaactaaaattatcttgcggcccactcttttctctatctcagtactttttattatcacaatttcaag 36443265  T
Q  176 tcaatggaaatgtataatcaattatcttgaatttttgaattttaaggtatgtaatttaannnnnnnnnnatgctaaatcttgtgtttaatgcttattata 275  Q
    ||||| |||||| |||   |||||| ||||||       |||||||||||  |||||||          ||| | |||||| | ||||||| ||||||||    
T  36443266 tcaatcgaaatgcatagataattattttgaat-------ttttaaggtatacaatttaa---ttttttgatggtcaatcttatatttaatgtttattata 36443355  T
Q  276 acataaattttgtgtttatattatagtttattt 308  Q
    ||||||||||||||| |||||||||||||||||    
T  36443356 acataaattttgtgtatatattatagtttattt 36443388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 35203742 - 35203797
Alignment:
Q  256 tgtgtttaatgcttattataacataaattttgtgtt--tatattatagtttatttt 309  Q
    |||||||||| | ||||||||||||| |||||| ||  ||||||||||||||||||    
T  35203742 tgtgtttaatacgtattataacataagttttgtatttatatattatagtttatttt 35203797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 92 - 329
Target Start/End: Original strand, 12024777 - 12025006
Alignment:
Q  92 aaaatatttttgatttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgtata 191  Q
    ||||||||||| ||||||||||||||| | ||||  | ||||| ||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||||| |    
T  12024777 aaaatattttttatttttaactaaaataatcttgcagcccaccctcttctccatctcagtacggtttatcatcacaatttcaagtcaatcgaaatgtaaa 12024876  T
Q  192 atcaattatcttgaatttttgaattttaaggtatgtaatttaannnnnnnnnnatgctaaatcttgtgtttaatgct--tattataacataaattttgtg 289  Q
       ||||||||| |||||||       |||||||  |||||||          | | | ||||||||||||||||||  ||||||||||||||||||||     
T  12024877 ggtaattatctttaattttt-------aaggtatacaatttaattttttt---acggtcaatcttgtgtttaatgctcttattataacataaattttgta 12024966  T
Q  290 tttatattatagtttatttttctggcccgcccaaataatt 329  Q
    ||||||||||||||||||||| |||||| |||||| ||||    
T  12024967 tttatattatagtttatttttgtggcccacccaaacaatt 12025006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 31236573 - 31236492
Alignment:
Q  254 cttgtgtttaatgcttattataacataaattttgtgtttatattatagtttatttttctggcccgcccaaataattctttct 335  Q
    ||||||||||||| |||||||||| |||||||||||| ||||||||| ||||||||| ||| || |||||| |||| |||||    
T  31236573 cttgtgtttaatgtttattataacctaaattttgtgtatatattatactttatttttgtggtccacccaaacaattttttct 31236492  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 31236703 - 31236603
Alignment:
Q  110 aactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgtataatcaattatcttgaattt 209  Q
    |||||||||||| |||  | ||||| ||||||| ||||  |||| ||||||||||||||||||||||| || ||||||||||   |||||||||| ||||    
T  31236703 aactaaaattactttgctgcccaccctcttctccatcttagtacattttattatcacaatttcaagtcgatcgaaatgtatagataattatcttggattt 31236604  T
Q  210 t 210  Q
    |    
T  31236603 t 31236603  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 907574 - 907609
Alignment:
Q  255 ttgtgtttaatgcttattataacataaattttgtgt 290  Q
    ||||||||||||||||||| ||||||||||||||||    
T  907574 ttgtgtttaatgcttattaaaacataaattttgtgt 907609  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 436
Target Start/End: Original strand, 8034568 - 8034631
Alignment:
Q  373 aggctcttccacttaatgaattaatcttttaggttggacttttctcataggcttaagtcctaat 436  Q
    |||||||||||| |||||||||| | ||||   |||||||||||||||| ||||||||| ||||    
T  8034568 aggctcttccacctaatgaattagtattttgatttggacttttctcatatgcttaagtcttaat 8034631  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 438
Target Start/End: Complemental strand, 34228496 - 34228431
Alignment:
Q  373 aggctcttccacttaatgaattaatcttttaggttggacttttctcataggcttaagtcctaataa 438  Q
    ||||||| |||||||||| | || |||||| ||||||||| | ||||| | |||||||||||||||    
T  34228496 aggctctcccacttaatggactagtcttttgggttggactctcctcatggacttaagtcctaataa 34228431  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 296
Target Start/End: Complemental strand, 26655572 - 26655536
Alignment:
Q  260 tttaatgcttattataacataaattttgtgtttatat 296  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  26655572 tttaaagcttattataacataaaatttgtgtttatat 26655536  T

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Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 329
Target Start/End: Complemental strand, 41575743 - 41575665
Alignment:
Q  251 aatcttgtgtttaatgcttattataacataaattttgtgtttatattatagtttatttttctggcccgcccaaataatt 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||| ||||    
T  41575743 aatcttgtgtttaatgcttattataacataaattttgtgtttatattatagtttatgtttatggtccacccaaacaatt 41575665  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 53687608 - 53687554
Alignment:
Q  257 gtgtttaatgcttattataacataaattttgtgtt--tatattatagtttatttt 309  Q
    ||||||||||||||||| ||| |||||||| ||||  ||||||||||||||||||    
T  53687608 gtgtttaatgcttattacaacttaaattttatgtttatatattatagtttatttt 53687554  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 211
Target Start/End: Original strand, 38700665 - 38700770
Alignment:
Q  106 ttttaactaaaattaccttgtggtccaccatcttctcaatctccgtacgttttattatcacaatttcaagtcaatggaaatgtataatcaattatcttga 205  Q
    |||||| ||||||||  |||||   |||| ||||||| ||||| ||| |  ||||||||||| |||||||||| | ||||||||||   |||||| ||||    
T  38700665 ttttaagtaaaattatattgtgtcacaccttcttctccatctcagtatgagttattatcacactttcaagtcattcgaaatgtatagataattattttga 38700764  T
Q  206 attttt 211  Q
    ||||||    
T  38700765 attttt 38700770  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 20623647 - 20623687
Alignment:
Q  138 ttctcaatctccgtacgttttattatcacaatttcaagtca 178  Q
    |||||||||||  |||| |||||||||||||||||||||||    
T  20623647 ttctcaatctcaatacgctttattatcacaatttcaagtca 20623687  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 3473817 - 3473753
Alignment:
Q  254 cttgtgtttaatgcttattataacataaattttgtgttt--atattatagtttatttttctggcc 316  Q
    |||||||||||||||||| | |||||||||||||||| |  ||||||| |||||| ||| |||||    
T  3473817 cttgtgtttaatgcttatgaaaacataaattttgtgtatacatattattgtttatatttgtggcc 3473753  T

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