View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7170_low_1 (Length: 754)
Name: NF7170_low_1
Description: NF7170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7170_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 735
Target Start/End: Complemental strand, 27450640 - 27449910
Alignment:
| Q |
17 |
acatcacctgcagtgcaaagttttctcttgttagacatgaaatgtataagttttctttgtttgttcaaagttaaaggatattaaaattctgttatttgtg |
116 |
Q |
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||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||| |
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| T |
27450640 |
acatcacctgcagtgcaaagttttctcttattagacattgaatgtataagttttctttgattattcacagttaaaggatattaaaattctgttatttgtg |
27450541 |
T |
|
| Q |
117 |
gataaaccattttgaaataacaaaaaat-tcatttgtgnnnnnnnn-actacatctagtgagcctcatattattttaaaccacttgaact------aaag |
208 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| ||||||||| |||| |
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| T |
27450540 |
gataaaccattttgaaataacaaaaaaactcatttgtgtttttttttactacatctagtgagcctcacattattttaaactacttgaactctaagaaaag |
27450441 |
T |
|
| Q |
209 |
tttaaggaaggaaaactattaatactnnnnnnnnntagctctatagtaaccaagttagcaacagatt-agaggcaaaaaataccaaattagtttctaaat |
307 |
Q |
| |
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||||||||||| ||| ||||||| | |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
27450440 |
tttaaggaaggtaaagaattaataatacaaaaaaatagctctatagtaaccaagttagcaacagatttacaggcaaaaaataccaaattagtttctaaat |
27450341 |
T |
|
| Q |
308 |
tggtcactaaaattagggagtaatgatatataggcatttcataaatcgatctttaaaccggtcacaaactcattttgggact------------tatata |
395 |
Q |
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|||||||||||||||||||| |||||| ||||||| |||||||||||||||||| |||| | ||||||||||||| |||||| ||| || |
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| T |
27450340 |
tggtcactaaaattagggagcaatgatgtataggcttttcataaatcgatctttgaaccagacacaaactcatttcgggactgatttagcgacttattta |
27450241 |
T |
|
| Q |
396 |
gaaaccggcttttcaaatcgatgtaaattagaccgaaatattttggtcacttcatcagttgcttcataccaaatttttagttgtattactttttgaatac |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
27450240 |
gaaaccggcttttcaaatcgatgtaaattagaccgaaatattttggtcatttaatcagttgctacataccaaatttttagttgtattactttttggatac |
27450141 |
T |
|
| Q |
496 |
cttgtttaatggagcctgctctaaaagatctttcactgcagaaaccatgccatgcacactaagttttggaatagccaagccaaaatcaaggtaaacctga |
595 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27450140 |
cttgtttaatggagcctgctctaaaagatctttcactgcagaaaccatgccatgcacactaagctttggaatagccaagccaaaatcaaggtaaacctga |
27450041 |
T |
|
| Q |
596 |
aggacaaagattaggttacttgctttgtaattcaaattcaaatgtattactacaagtcactgagttgtaaagt-tttttacctgggagtacagagaagcc |
694 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||| |
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| T |
27450040 |
aggacaaagattaggttacttgctttgtaattcaaattcgaatgtatt----------actgagttgtgaagtgtttttacctgggagtacagagaagcc |
27449951 |
T |
|
| Q |
695 |
agatatgatgcttcctttgagaatggatatgatgtatgtaa |
735 |
Q |
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| T |
27449950 |
agatatgatgcttcctttgagaatggatatgatgtatgtaa |
27449910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 494 - 596
Target Start/End: Complemental strand, 27425259 - 27425157
Alignment:
| Q |
494 |
accttgtttaatggagcctgctctaaaagatctttcactgcagaaaccatgccatgcacactaagttttggaatagccaagccaaaatcaaggtaaacct |
593 |
Q |
| |
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||||| |||| ||||||| ||||||||| |||||||| || |||| ||| ||||| |||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
27425259 |
accttatttattggagccagctctaaaatatctttcaatgatgaaatcatcccatgtacactaagctttggaattgccaatccaaaatcaaggtaaacct |
27425160 |
T |
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| Q |
594 |
gaa |
596 |
Q |
| |
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||| |
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| T |
27425159 |
gaa |
27425157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 494 - 596
Target Start/End: Complemental strand, 27404233 - 27404131
Alignment:
| Q |
494 |
accttgtttaatggagcctgctctaaaagatctttcactgcagaaaccatgccatgcacactaagttttggaatagccaagccaaaatcaaggtaaacct |
593 |
Q |
| |
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||||| |||| ||||||| |||||||||| ||||||| || |||| ||| ||||| ||||| || |||||||| |||| ||||||||||||||||||| |
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| T |
27404233 |
accttatttattggagccagctctaaaagctctttcaatgatgaaatcatcccatgtacactcagctttggaattgccagaccaaaatcaaggtaaacct |
27404134 |
T |
|
| Q |
594 |
gaa |
596 |
Q |
| |
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||| |
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|
| T |
27404133 |
gaa |
27404131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 735
Target Start/End: Complemental strand, 27404046 - 27403982
Alignment:
| Q |
671 |
tttacctgggagtacagagaagccagatatgatgcttcctttgagaatggatatgatgtatgtaa |
735 |
Q |
| |
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|||||||| | ||||| ||| || ||||||||||||||| ||||||||||||| |||| |||||| |
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| T |
27404046 |
tttacctgagggtacacagatgctagatatgatgcttcccttgagaatggataggatgcatgtaa |
27403982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 695 - 735
Target Start/End: Complemental strand, 27425050 - 27425010
Alignment:
| Q |
695 |
agatatgatgcttcctttgagaatggatatgatgtatgtaa |
735 |
Q |
| |
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||||||||||||||||||||||||||||| |||| |||||| |
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| T |
27425050 |
agatatgatgcttcctttgagaatggataggatgcatgtaa |
27425010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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