View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7170_low_2 (Length: 566)
Name: NF7170_low_2
Description: NF7170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7170_low_2 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Original strand, 88714 - 89247
Alignment:
| Q |
17 |
caacattttctttttccaaagcataatccttttaagttttcatcagtaccataaattggaagcttcctataattagaatttgctaaaaatcttataccta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88714 |
caacattttctttttccaaagcataatccttttaagttttcatcagtaccataaattggaagcttcctataattagaatttgctaaaaatcttataccta |
88813 |
T |
|
| Q |
117 |
catccgctatcatacattaggtatccatcagggccttcacatattttactttcaatacattcaaaattagcaagttaatgtaaatagtatttgttagtag |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88814 |
ca-ccgctatcatacattaggtatccatcagggccttcacatattttactttcaatacattcaaaattagcaagttaatgtaaatagtatttgttagtag |
88912 |
T |
|
| Q |
217 |
taatatagatacaatggaacattgttggtacctaataaaattgtaagaagtgaattagattagtatttcatactaatgaatttcacaatgtcctttttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
88913 |
taatatagatacaatggaacattgttggtacctaataaaattgtaagaagtgaattagattagtatttcatactaatgaatttcacaatgtcctttttat |
89012 |
T |
|
| Q |
317 |
tgcatattactgtcattttgaattacattttgaactttgtttcagctgtgaataattttctgatgtcatactttttaggttacatgggatgaacctgagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
89013 |
tgcatattactgtcattttgaattacattttgaactttgtttcagctgtgaataattttctgatgtcatactttttaggttacatgggatgaacctgagt |
89112 |
T |
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| Q |
417 |
tacttaaaaatgtgaaaagagtgaatccgtggcaagttgaaatagtatcgaacatgccttcgatccctctttcgcctttcataccgccaaggaagaaatt |
516 |
Q |
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| T |
89113 |
tacttaaaaatgtgaaaagagtgaatccgtggcaagttgaaatagtatcgaacatgccttcgatccctctttcgcctttcataccgccaaggaagaaatt |
89212 |
T |
|
| Q |
517 |
gagattgcctcaactcccagatttcccaattgatg |
551 |
Q |
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| T |
89213 |
gagattgcctcaactcccagatttcccaattgatg |
89247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 500 - 549
Target Start/End: Original strand, 97081 - 97130
Alignment:
| Q |
500 |
ccgccaaggaagaaattgagattgcctcaactcccagatttcccaattga |
549 |
Q |
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|||||||||| |||||||||||| |||||||||||| |||||||| |||| |
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| T |
97081 |
ccgccaaggacgaaattgagattacctcaactcccaaatttcccacttga |
97130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Complemental strand, 40877569 - 40877036
Alignment:
| Q |
17 |
caacattttctttttccaaagcataatccttttaagttttcatcagtaccataaattggaagcttcctataattagaatttgctaaaaatcttataccta |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877569 |
caacattttctttttccaaagcataatccttttaagttttcatcagtaccataaattggaagcttcctataattagaatttgctaaaaatcttataccta |
40877470 |
T |
|
| Q |
117 |
catccgctatcatacattaggtatccatcagggccttcacatattttactttcaatacattcaaaattagcaagttaatgtaaatagtatttgttagtag |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877469 |
ca-ccgctatcatacattaggtatccatcagggccttcacatattttactttcaatacattcaaaattagcaagttaatgtaaatagtatttgttagtag |
40877371 |
T |
|
| Q |
217 |
taatatagatacaatggaacattgttggtacctaataaaattgtaagaagtgaattagattagtatttcatactaatgaatttcacaatgtcctttttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877370 |
taatatagatacaatggaacattgttggtacctaataaaattgtaagaagtgaattagattagtatttcatactaatgaatttcacaatgtcctttttat |
40877271 |
T |
|
| Q |
317 |
tgcatattactgtcattttgaattacattttgaactttgtttcagctgtgaataattttctgatgtcatactttttaggttacatgggatgaacctgagt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40877270 |
tgcatattactgtcattttgaattacattttgaactttgtttcagctgtgaataattttctgatgtcatactttttaggttacatgggatgaacctgagt |
40877171 |
T |
|
| Q |
417 |
tacttaaaaatgtgaaaagagtgaatccgtggcaagttgaaatagtatcgaacatgccttcgatccctctttcgcctttcataccgccaaggaagaaatt |
516 |
Q |
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| T |
40877170 |
tacttaaaaatgtgaaaagagtgaatccgtggcaagttgaaatagtatcgaacatgccttcgatccctctttcgcctttcataccgccaaggaagaaatt |
40877071 |
T |
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| Q |
517 |
gagattgcctcaactcccagatttcccaattgatg |
551 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
40877070 |
gagattgcctcaactcccagatttcccaattgatg |
40877036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 40869201 - 40869152
Alignment:
| Q |
500 |
ccgccaaggaagaaattgagattgcctcaactcccagatttcccaattga |
549 |
Q |
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|||||||||| |||||||||||| |||||||||||| |||||||| |||| |
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| T |
40869201 |
ccgccaaggacgaaattgagattacctcaactcccaaatttcccacttga |
40869152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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