View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7170_low_3 (Length: 466)
Name: NF7170_low_3
Description: NF7170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7170_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 24206679 - 24207119
Alignment:
| Q |
14 |
acatcaatcaagaaccacctattcgaatataaagaggtgaatctttctttttgtgaacataatgtaggatgaacatggagatagatcttcttagctatta |
113 |
Q |
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| T |
24206679 |
acatcaatcaagaaccacatattcaaatataaagaggtgaatctttctttttgtgaacatgatgtaggatgaacatggagatagatcttcttagctatta |
24206778 |
T |
|
| Q |
114 |
aagaggttcccatgactaaatacctactataggtgaaaggattcatgatgatttctttgtgttgaacaaggttagggtttgagtagaggtttcatgtatg |
213 |
Q |
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| T |
24206779 |
aagaggttcccatgactaaatacctaatataggtgaaaggattcatgatgatttctttgtgttgaacaaggttaggggttgagtagaggtttcatgtatg |
24206878 |
T |
|
| Q |
214 |
tggaagatgtatgaactgagtgttttaattaccaattgactcattagaaggaggaccaatggaggtttttgggtttctcaattatggagatgattaaggg |
313 |
Q |
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| T |
24206879 |
tggaagatgtatgaactgagtgttttaattaccaattgtctcattagaaggaggaccaatggaggtttttgggtttctcaattatggagatgatgaaggg |
24206978 |
T |
|
| Q |
314 |
aaactagggtatagtagaatcaattttagatgggaaaattggaagaataagtaatgaatggaatctccatcaactagacaagaaaactataactttgatg |
413 |
Q |
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| T |
24206979 |
aaactagggtatagtagaatcaattttagatgggaaaattggaagaataagtaatgaatggaatctccgtcaactagacaagaaaactagaactttgatg |
24207078 |
T |
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| Q |
414 |
ttttgcacatgcaaaataagatcttctgggcatgatagtat |
454 |
Q |
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| T |
24207079 |
ttttgcacatgcaaaatgagatctcgtgggcatgatagtat |
24207119 |
T |
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