View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7170_low_4 (Length: 353)
Name: NF7170_low_4
Description: NF7170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7170_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 13608801 - 13608468
Alignment:
| Q |
1 |
tccttgaaaattattcgttcaatgaaacaggtaaagttttgttagtaaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttactta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608801 |
tccttgaaaattattcgttcaatgaaacaggtaaagttttgttagtaaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttactta |
13608702 |
T |
|
| Q |
101 |
tccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatgctttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608701 |
tccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatgctttt |
13608602 |
T |
|
| Q |
201 |
gaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaataggtagaacagtttgtcctgatacttcaaagtattc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13608601 |
gaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcgcatcatagaaaataggtagaacagtttgtcctgatacttcaaagtattc |
13608502 |
T |
|
| Q |
301 |
agcaatttttgccagttcttgtaagcaccatgtg |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
13608501 |
agcaatttttgccagttcttgtaagcaccatgtg |
13608468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 46 - 334
Target Start/End: Original strand, 6472890 - 6473180
Alignment:
| Q |
46 |
taaacttaaaagtgttgatcag--cttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttaggg |
143 |
Q |
| |
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||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6472890 |
taaacttaaaagtgttgatcacaacttgcggcaaacatagaaaatactacttacttatcctttatatcccaaccagagagattggctacttgtgttaggg |
6472989 |
T |
|
| Q |
144 |
ctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcaga |
243 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||| |||| ||||||||| |||| |
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| T |
6472990 |
ctcccctccatctttgcactgcctctaagtttcctttgaatctttctccatgctcaagaaagggtttttcataatctccggtttgttttcgtacctcaga |
6473089 |
T |
|
| Q |
244 |
tggactcacatcatagaaaataggtagaacagtttgtcctgatacttcaaagtattcagcaatttttgccagttcttgtaagcaccatgtg |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| | | | | |||||||| ||| ||| |||||| |||||||||||| |
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| T |
6473090 |
tggactcacatcatagaaaataggtagaacagtttgtccttgtacatggatgcaatcagcaatatttaccaattcttgcaagcaccatgtg |
6473180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 7e-68; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 68 - 306
Target Start/End: Complemental strand, 31244713 - 31244475
Alignment:
| Q |
68 |
cttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcct |
167 |
Q |
| |
|
||||| ||||||| |||||| |||||||||| |||| | | ||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||| || |
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|
| T |
31244713 |
cttgttgcaaacatagaaaagactacttactgatcccttacatcccaaccagagagttcggctacttgtgctagggctcctctccatctttgcactttct |
31244614 |
T |
|
| Q |
168 |
ctaagttttctttgaatctttcttcatgcttttgaaaggctttttcataatctccgctttgctttcgtaccgcagatggactcacatcatagaaaatagg |
267 |
Q |
| |
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|||| ||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||| |
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| T |
31244613 |
ctaaatttcctttgaatctttcttcatgatccctaaaggctttttcataatctccgctttgctttcgcacctcagatggatccacatcatagaaaatagg |
31244514 |
T |
|
| Q |
268 |
tagaacagtttgtcctgatacttcaaagtattcagcaat |
306 |
Q |
| |
|
||||||| ||||||||| |||||||| | |||||||||| |
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| T |
31244513 |
tagaacaatttgtcctgttacttcaatgcattcagcaat |
31244475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 195
Target Start/End: Original strand, 31150836 - 31150922
Alignment:
| Q |
109 |
atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcacttcctctaagttttctttgaatctttcttcatg |
195 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || ||| |||||||||||||||| || ||||||| || ||||||||||||||| |
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| T |
31150836 |
atcccatccagagagattggccacttgtgtcagtgcttccctccatctttgcacaatttcaaagttttgttggaatctttcttcatg |
31150922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 31159718 - 31159784
Alignment:
| Q |
93 |
cttacttatccttcatatcccaaccagagagattggctacttgtgttagggctcccctccatctttg |
159 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| ||||||||||| | ||||||||||||| |
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| T |
31159718 |
cttacttatgatgcatatcccaaccagagagattggcgacttgtgttagacttgccctccatctttg |
31159784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 31496575 - 31496522
Alignment:
| Q |
109 |
atcccaaccagagagattggctacttgtgttagggctcccctccatctttgcac |
162 |
Q |
| |
|
||||||||||||||||| || |||||| |||| ||| |||||||||||||||| |
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|
| T |
31496575 |
atcccaaccagagagatcagcgacttgtattagagcttccctccatctttgcac |
31496522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 46 - 293
Target Start/End: Complemental strand, 14724250 - 14723997
Alignment:
| Q |
46 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct |
145 |
Q |
| |
|
|||||||||||| |||||| | ||||| || |||| ||||||||| ||||||| |||||| |||| ||| |||| || ||||||||||||| || |||| |
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| T |
14724250 |
taaacttaaaagcgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagccaggga--ttggctacttgtgctaaggct |
14724153 |
T |
|
| Q |
146 |
cccctccatctttgcacttcctctaagttttctttgaatctttcttcat--------gcttttgaaaggctttttcataatctccgctttgctttcgtac |
237 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||||||| |||||| |||| ||||| ||||||||||||| |||| ||| ||||||||| |
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| T |
14724152 |
cccctccatatttgcaaatcctctaaattttctttgaatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgtac |
14724053 |
T |
|
| Q |
238 |
cgcagatggactcacatcatagaaaataggtagaacagtttgtcctgatacttcaa |
293 |
Q |
| |
|
| ||||||||||| | ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
14724052 |
ctcagatggactcccgtcatagaaaataggtagaacaatttgtcctgatacttcaa |
14723997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 46 - 293
Target Start/End: Original strand, 17599600 - 17599853
Alignment:
| Q |
46 |
taaacttaaaagtgttgatcagcttgtggcaaacagagaaaatactacttacttatccttcatatcccaaccagagagattggctacttgtgttagggct |
145 |
Q |
| |
|
||||||||||||||||||| | ||||| || |||| ||||||||| ||||||| |||||| |||| ||| |||| || ||||||||||| |||| ||| |
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|
| T |
17599600 |
taaacttaaaagtgttgattatcttgttgctaacatagaaaatacaacttactgatcctttatattccagccaggga--ttggctacttgagttaaggca |
17599697 |
T |
|
| Q |
146 |
cccctccatctttgcacttcctctaagttttctttgaatctttcttcat--------gcttttgaaaggctttttcataatctccgctttgctttcgtac |
237 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||||||| |||||| |||| ||||| ||||||||||||| |||| ||| ||||||||| |
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|
| T |
17599698 |
cccctccatatttgcaaatcctctaaattttctttgaatcttgcttcattgattcatgcttctgaaaagctttttcataatttccgtttttctttcgtac |
17599797 |
T |
|
| Q |
238 |
cgcagatggactcacatcatagaaaataggtagaacagtttgtcctgatacttcaa |
293 |
Q |
| |
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| ||||||||||| | |||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
17599798 |
ctcagatggactcccgtcatagaaaataggtagaacagtttgtcctgatagttcaa |
17599853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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