View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7170_low_5 (Length: 346)
Name: NF7170_low_5
Description: NF7170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7170_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 26167049 - 26166807
Alignment:
| Q |
16 |
atggccgcagttgcagttacgctacaaaccttaatattgcattcaatattgtggtcgtggacataaacttagaagttaaaactatggcttatacaagtgt |
115 |
Q |
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| T |
26167049 |
atggccgcagttgcagttacgctacaaaccttaatattgcattcaatattgtggtcgtggacataaacttagaagttaaaactatggcttatacaagtgt |
26166950 |
T |
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| Q |
116 |
gtgctagaatgtgcctatatgacgcgnnnnnnnnnnnnnnnnnnnnnnncctgcgagtttctgcagtctcaaatctgcaatccataattccttaaattga |
215 |
Q |
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| T |
26166949 |
gtgctagaatgtgcctatatgacgcggaaaagaaaagaaagaaagaaaacctgcgagtttctgcagtctcaaatctgcaatccataattccttaaattga |
26166850 |
T |
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| Q |
216 |
ttttactaatcttcttatgatagactagaaagtagaaaagaat |
258 |
Q |
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| T |
26166849 |
ttttactaatcttcttatgatagactagaaagtagaaaagaat |
26166807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 26166778 - 26166706
Alignment:
| Q |
257 |
atggtatttatagagaaagtccaagggtattgtactatagagtttatcacaattgttccaacttgtataaatg |
329 |
Q |
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| T |
26166778 |
atggtatttatagagagagtccaagggtattgtactatagagtttatcacaattgttccaacttgtataaatg |
26166706 |
T |
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