View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7170_low_8 (Length: 257)
Name: NF7170_low_8
Description: NF7170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7170_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 43368768 - 43369003
Alignment:
| Q |
4 |
actttggtgtttgatgttgttatgaccgacgttaaccttcacattcttcttatgctggcnnnnnnnnnnnnnnnnnnnattcttaccaatagtttcaatc |
103 |
Q |
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| T |
43368768 |
actttggtgtttgatgttgttatgaccgacgttaaccttcacattctttttatgctggccttttttcttcttctttttattcttaccaatagtttcaatc |
43368867 |
T |
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| Q |
104 |
cccttcgaatctccattaataaaagacaaaaggtcatcaagtgaacgttgatcttcttcaacatcaacattcttctttatcctttgaggcccttcaagta |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43368868 |
cccttcgaatctccattaataaaagacaaaaggtcatcaagtgaacgttgatcttcttcaacatcaacattcttctttatcctttgaggcccttcaagta |
43368967 |
T |
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| Q |
204 |
attcttttttcttcttggcatacaatcggttcaaaa |
239 |
Q |
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||| |||||||||||||||||||||||||||||||| |
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| T |
43368968 |
attgttttttcttcttggcatacaatcggttcaaaa |
43369003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 239
Target Start/End: Original strand, 43364721 - 43364855
Alignment:
| Q |
105 |
ccttcgaatctccattaataaaagacaaaaggtcatcaagtgaacgttgatcttcttcaacatcaacattcttctttatcctttgaggcccttcaagtaa |
204 |
Q |
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|||||| ||| |||||||||||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||| |||| | || ||| ||||| |
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| T |
43364721 |
ccttcggatcaccattaataaaagacagaaggtcgtcaactgaacgttcatcttcttcaacatcaacattcttctttatgctttcacgctctttaagtag |
43364820 |
T |
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| Q |
205 |
ttcttttttcttcttggcatacaatcggttcaaaa |
239 |
Q |
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| T |
43364821 |
ttctcttctcttcttggcatacaagcggttcaaaa |
43364855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 11368039 - 11368002
Alignment:
| Q |
115 |
tccattaataaaagacaaaaggtcatcaagtgaacgtt |
152 |
Q |
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| T |
11368039 |
tccattaataaaagacaaaaggtcatcaactgaacgtt |
11368002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 29388524 - 29388552
Alignment:
| Q |
115 |
tccattaataaaagacaaaaggtcatcaa |
143 |
Q |
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| T |
29388524 |
tccattaataaaagacaaaaggtcatcaa |
29388552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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