View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7171_high_10 (Length: 248)
Name: NF7171_high_10
Description: NF7171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7171_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 29 - 223
Target Start/End: Original strand, 31695840 - 31696034
Alignment:
| Q |
29 |
atattccatacttaatttagtgtaataatctttattttgatattaaagttttgtagcatatacaaagatcaatccgaatattgaaccaagttgagtcaag |
128 |
Q |
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| T |
31695840 |
atattccatacttaatttagggtaataatctttattttgatattaaagttttgtagcatatgcaaagatcaatccgaatattgaaccaagttgagtcaag |
31695939 |
T |
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| Q |
129 |
ttgttgacaatcaaagtgccgggtcagacaccatgacatcgaagtcattgactatagttgcaaaaaatactacagactattcggtaatattaaac |
223 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31695940 |
ttgttgacaatcaaagtgccgggtaagacactatgacatcgaagtcattgactatagttgcaaaaaatactacagactattcggtaatattaaac |
31696034 |
T |
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