View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7171_high_2 (Length: 473)
Name: NF7171_high_2
Description: NF7171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7171_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 26086601 - 26086155
Alignment:
| Q |
17 |
acaactatgtataaattgttaattcagacaattcgtat-agaagtgacatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26086601 |
acaactatgtataaattgttaattcagacaattcgtattagaagtgacatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcga |
26086502 |
T |
|
| Q |
116 |
ctaccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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|
| T |
26086501 |
ctaccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtgacaatagtttgaacatcacttcctccaattctactatttc |
26086402 |
T |
|
| Q |
216 |
tagtacccaaggaaatgttgggaaatctgtcttgtcagaagctattttctgtctgttttcagtttcaaatatgctttccttttatacatcaattacaaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26086401 |
tagtacccaaggaaatgttgggaaatctgtcttgtcagaagctattttctgtctgttttcagtttcaaatatgctttccttttatacatcaattacaaca |
26086302 |
T |
|
| Q |
316 |
ataattattatgacctcaagtgtgatgcaatgcatggttgtgtacatgctaatgtattggttttccctttgttatatgatctctatgttgaagatatccc |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26086301 |
ataattattatgacctcaagtgtgatgcaatgcatggttgtgtacatgctaatgtattggttttccctttgttatatgatctctatgttgaagatatccc |
26086202 |
T |
|
| Q |
416 |
ctacatatgccagcgccatttttgttaaaatcccttttgttgttctt |
462 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26086201 |
ctgcatatgccagcgccatttttgttaaaatcccttttgttgttctt |
26086155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 14727695 - 14727856
Alignment:
| Q |
54 |
tagaagtgacatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtgga |
153 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| ||| ||||||| |||||| | ||| ||||||||||||| |
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|
| T |
14727695 |
tagaagtgacatgacagaagagcaacgcaacatttggttgatagtcgccactcttattgcaactgccatgtaccaatcagttttgagtccccctggtgga |
14727794 |
T |
|
| Q |
154 |
gtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttc |
215 |
Q |
| |
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||||||| || |||||| |||||| ||| |||||||||| |||||||||||||||||||||| |
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|
| T |
14727795 |
gtttatcagattagtgctggtgacaataatttgaacatcacttcctccaattctactatttc |
14727856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 28693300 - 28693149
Alignment:
| Q |
67 |
acagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccga-gt |
165 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||| || | |
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|
| T |
28693300 |
acagaggatcaacgcaacatttggttaatagtcgcgactcttattgcaactaccatgtttgaatcagctctgacaccccctggtggaatttatcagattt |
28693201 |
T |
|
| Q |
166 |
agtgccggtgacgatagtttgaacatcgcttcctccaattctactatttcta |
217 |
Q |
| |
|
||||| |||||| || |||||||||| ||||||| || ||||||||||||| |
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|
| T |
28693200 |
agtgctggtgacagtaatttgaacatcacttcctcaaactctactatttcta |
28693149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 15329798 - 15329984
Alignment:
| Q |
62 |
acatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatcc |
161 |
Q |
| |
|
|||| |||| |||| |||| ||| ||||||| |||| || |||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||| |
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|
| T |
15329798 |
acataacaggggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatca |
15329897 |
T |
|
| Q |
162 |
gagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtc |
251 |
Q |
| |
|
|| |||||| | |||| ||| |||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||| ||||||| |
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|
| T |
15329898 |
gattagtgctgatgacaataatttgaacatcacttcctccaattctactatttcta---ccctaaaaaatgttgggaaatctatcttgtc |
15329984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 15510167 - 15510353
Alignment:
| Q |
62 |
acatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatcc |
161 |
Q |
| |
|
|||| |||| |||| |||| ||| ||||||| |||| || |||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||| |
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|
| T |
15510167 |
acataacaggggaggaacgtaacgcttggttagtagttgcgactcttattgcaactaccatgtacgaatcaactctgagtccccctggtggagtttatca |
15510266 |
T |
|
| Q |
162 |
gagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtc |
251 |
Q |
| |
|
|| |||||| | |||| ||| |||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||| ||||||| |
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|
| T |
15510267 |
gattagtgctgatgacaataatttgaacatcacttcctccaattctactatttcta---ccctaaaaaatgttgggaaatctatcttgtc |
15510353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 54 - 251
Target Start/End: Original strand, 28865884 - 28866078
Alignment:
| Q |
54 |
tagaagtgacatgacagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtgga |
153 |
Q |
| |
|
||||| |||||| |||| |||| |||| |||| ||||||| |||| || |||||||||| |||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
28865884 |
tagaactgacataacaggggaggaacgtaacacttggttagtagttgcgactcttattgcaactaccatgttcgaatcaactctgagtccccctggtgga |
28865983 |
T |
|
| Q |
154 |
gtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtc |
251 |
Q |
| |
|
|||||| || |||| | | |||| ||| |||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||||||| |
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|
| T |
28865984 |
ttttatcagattagttctgatgacaataatttgaacatcacttcctccaattctactatttcta---ccctaaaaaatgttgggaaatctgtcttgtc |
28866078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 26090186 - 26090318
Alignment:
| Q |
76 |
caacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccgagtagtgccggtg |
175 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||| |||||||||||||| || ||| | |||| |
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|
| T |
26090186 |
caactcaagatttggttaatagtcgcgtctcttattgcatctaccatgtatga----gctttgactccccatggtggagtttatcagattagggttggtg |
26090281 |
T |
|
| Q |
176 |
acgatagtttgaacatcgcttcctccaattctactat |
212 |
Q |
| |
|
|| ||| || ||||||| |||||| |||||||||||| |
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|
| T |
26090282 |
acaataattggaacatcacttccttcaattctactat |
26090318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 141 - 324
Target Start/End: Original strand, 29552813 - 29552993
Alignment:
| Q |
141 |
tccccctggtggagtttatccgagtagtgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaa |
240 |
Q |
| |
|
|||||||||||||||||||| | || ||| ||||| | | |||||||||| |||||||||||||||||||||| ||||| |||||||| ||| ||| |
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|
| T |
29552813 |
tccccctggtggagtttatcaggttaatgctagtgacaaaaatttgaacatcacttcctccaattctactatttc---taccctaggaaatgctggaaaa |
29552909 |
T |
|
| Q |
241 |
tctgtcttgtcagaagctattttctgtctgttttcagtttcaaatatgctttccttttatacatcaattacaacaataattatt |
324 |
Q |
| |
|
|| ||| ||||||||| | ||||| || ||||||| ||| ||||| ||||||||| | ||||||| || |||||||||| |
|
|
| T |
29552910 |
tcggtcatgtcagaagttgatttctttcggttttcattttggaatatagtttcctttttgatatcaattgcagtaataattatt |
29552993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 68 - 253
Target Start/End: Original strand, 30648837 - 30649019
Alignment:
| Q |
68 |
cagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccgagtag |
167 |
Q |
| |
|
||||||||||||| |||| |||||| ||||| || ||||| |||||||| |||| ||| |||||| ||| ||||||||||||| |||||| | ||| |
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|
| T |
30648837 |
cagaggagcaacgtaacacttggttgatagttgcgactcttgttgcgactgccatctatcaatcaggattgagtccccctggtggaatttatcaggttag |
30648936 |
T |
|
| Q |
168 |
tgccggtgacgatagtttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtcag |
253 |
Q |
| |
|
||| |||||| || ||||||| |||||||||||| ||| ||||| | ||| |||||||| ||||||||| |||||||||| |
|
|
| T |
30648937 |
tgctggtgacactaacacgaacatcacttcctccaattttaccatttc---tgccccaggaaatgctgggaaatcagtcttgtcag |
30649019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 253
Target Start/End: Original strand, 26089299 - 26089364
Alignment:
| Q |
185 |
tgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtcag |
253 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| | |||||||| |||||||||||| ||||||| |
|
|
| T |
26089299 |
tgaacatcacttcctccaattctactatttc---tactccaggaaatgctgggaaatctgttttgtcag |
26089364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 24509391 - 24509460
Alignment:
| Q |
183 |
tttgaacatcgcttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtca |
252 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||| |
|
|
| T |
24509391 |
tttgaacaccacttcctccgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtca |
24509460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 27714295 - 27714386
Alignment:
| Q |
69 |
agaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatc |
160 |
Q |
| |
|
||||||||||||||||| |||| | ||||| || ||||| |||| || |||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
27714295 |
agaggagcaacgcaacacttggatgatagttgcgactcttgttgcaacagccatgtatcaatcagcattgactcccgttggtggagtttatc |
27714386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 4819862 - 4820011
Alignment:
| Q |
68 |
cagaggagcaacgcaacatttggttaatagtcgcagctcttattgcgactaccatgtatgaatcagctctgactccccctggtggagtttatccgagtag |
167 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| || ||||| |||| ||| ||| | | ||||||| || |||| || ||||||||||||| | || |
|
|
| T |
4819862 |
cagaggagcaacgcaacacttggttgatagttgcgactcttgttgcaactgccacctttcaatcagcaatgtctccaccaggtggagtttatcaggttaa |
4819961 |
T |
|
| Q |
168 |
tgccggtgacgatagtttgaacatcgcttcctccaattctactatttcta |
217 |
Q |
| |
|
||| ||||| ||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
4819962 |
tgctagtgacagtagtttgaacatcacgtccaccaattctactatttcta |
4820011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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