View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7171_high_4 (Length: 350)
Name: NF7171_high_4
Description: NF7171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7171_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 13448883 - 13449201
Alignment:
| Q |
14 |
gttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13448883 |
gttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggcggttttccacacaa |
13448982 |
T |
|
| Q |
114 |
ggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacg |
213 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
13448983 |
ggtgatatggtgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacttaagtaaattgtttgttttgagggtttccacg |
13449082 |
T |
|
| Q |
214 |
agggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatga |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13449083 |
agggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatgggtacgtggagtcggagatga |
13449182 |
T |
|
| Q |
314 |
tacaatccggtggatcatt |
332 |
Q |
| |
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||||||||||||||||||| |
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| T |
13449183 |
tacaatccggtggatcatt |
13449201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 329
Target Start/End: Original strand, 13440720 - 13441035
Alignment:
| Q |
14 |
gttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaa |
113 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||| ||||| ||| ||||||||||| | |||| | | ||||||||||| |||||||| ||||| |
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| T |
13440720 |
gttcagtgaagttgttgatgatgagtgctttacttttgagcactgtcccaagcatcatttttaggaatttgctaattacctttggcggttttccgcacaa |
13440819 |
T |
|
| Q |
114 |
ggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacg |
213 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| || | ||| |||||| ||||||| || ||||| || |||| |
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| T |
13440820 |
ggttatacgatgaggaaaatttggaacaacaaaggaacttgaatccaaatcagaattagtatcagaatgaagtaagttgtttgcttggagggattccacg |
13440919 |
T |
|
| Q |
214 |
agggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatga |
313 |
Q |
| |
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|| ||||| | |||||| |||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||| || | |||||||||||||| |
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| T |
13440920 |
agagagacggtaaaaagtgacaatccattgaatgtgaggtttgggatctgaagcttatgcgccaagtcattagcccatgggtatgcggagtcggagatga |
13441019 |
T |
|
| Q |
314 |
tacaatccggtggatc |
329 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
13441020 |
tacaatctggtggatc |
13441035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 13455355 - 13455674
Alignment:
| Q |
15 |
ttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaag |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | ||||||||||| || | | |||| ||||| |||||| |||||| |||| ||| |
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|
| T |
13455355 |
ttcactgaagttgttgatgataagtgctttacttttaaatattgtctcaagcattgtttctaggaatgggatgattaactttggcggtttttcacataag |
13455454 |
T |
|
| Q |
115 |
gtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| | ||| |||||||||||||||||||||||| | || | |
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|
| T |
13455455 |
gtgatatgatgaggaaaatttggaacaacaaaggtacttgaatccgaatcaaaatttgtatcagaatgaagtaaattgtttgttttgagggtctccatta |
13455554 |
T |
|
| Q |
215 |
gggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatgat |
314 |
Q |
| |
|
||||||| ||||||||||||| ||| || ||||||||||| || ||||||||||||| ||||||||||||||||||||| || | | |||||||||||| |
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|
| T |
13455555 |
gggagacggcaaaaaggcacattccgttaaatgtgatgttaggaatctgaaacttatgggccaagtcattaacccatgggtatgcagcgtcggagatgat |
13455654 |
T |
|
| Q |
315 |
acaatccggtggatcatttg |
334 |
Q |
| |
|
|||||| || |||||||||| |
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|
| T |
13455655 |
acaatctgggggatcatttg |
13455674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 3417189 - 3416880
Alignment:
| Q |
14 |
gttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaa |
113 |
Q |
| |
|
||||| |||||||||||| ||| | | |||||||| | ||| || |||||||||| ||| |||||| ||| || |||||||||||||| | |||| |
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|
| T |
3417189 |
gttcaatgaagttgttgacgataaagccattacttttgaacactgtgtcaagcatcagtcctatgaatttactgagaacctttggtggtttactgcacat |
3417090 |
T |
|
| Q |
114 |
ggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatctgtctgagacataagtaaattgtttgttttgagggtttgcacg |
213 |
Q |
| |
|
||||||| || ||||||| |||||||| | | ||||||||||||||||||||||||| || | ||||||||| |||||| | |||| || || | |
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|
| T |
3417089 |
ggtgataggaagaggaaagtttggaacgatataggaacttgaatccgaatcagaatccgt------aaaaagtaaattatttgttctaagggattccatg |
3416996 |
T |
|
| Q |
214 |
agggagacagcaaaaaggcacaatccattgaatgtgatgtttgggatctgaaacttatcggccaagtcattaacccatggatacgtggagtcggagatga |
313 |
Q |
| |
|
|| |||| | ||||| | |||| ||||| |||||| || ||||| |||| ||| | ||||||||||||||||||||| || | ||||||||||||| |
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|
| T |
3416995 |
agcaagactggaaaaacggacaaaacattgtatgtgaaattagggatttgaagcttctgggccaagtcattaacccatgggtatgcagagtcggagatga |
3416896 |
T |
|
| Q |
314 |
tacaatccggtggatc |
329 |
Q |
| |
|
||||||| |||||||| |
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|
| T |
3416895 |
tacaatctggtggatc |
3416880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 170
Target Start/End: Original strand, 12541235 - 12541361
Alignment:
| Q |
44 |
tacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaac |
143 |
Q |
| |
|
||||||| | ||| || |||||||||| ||| |||||| | | || ||||||| ||||| | |||| ||||||| ||||||||||||||||||| || |
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|
| T |
12541235 |
tacttttgaacactgtgtcaagcatcaatcctatgaatttgctgagaacctttgacggtttactgcacatggtgatacgatgaggaaaatttggaacgac |
12541334 |
T |
|
| Q |
144 |
aaaggaacttgaatccgaatcagaatc |
170 |
Q |
| |
|
| | ||||||||||||||||||||||| |
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|
| T |
12541335 |
atacgaacttgaatccgaatcagaatc |
12541361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 28385884 - 28386009
Alignment:
| Q |
44 |
tacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaaggtga---tatgatgaggaaaatttggaac |
140 |
Q |
| |
|
||||||| |||||||| |||||||||||||| ||||| || | || |||||||||||||| | ||||||||| | ||| |||| ||| ||||||||| |
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|
| T |
28385884 |
tacttttgagcaccgtgtcaagcatcattcctatgaacatgctgagaacctttggtggtttactacacaaggtaatattatcatgatgaagatttggaac |
28385983 |
T |
|
| Q |
141 |
aacaaaggaacttgaatccgaatcag |
166 |
Q |
| |
|
||| | ||||||||||| ||||||| |
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|
| T |
28385984 |
gacatatgaacttgaatctgaatcag |
28386009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 12483041 - 12482964
Alignment:
| Q |
93 |
ctttggtggttttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
170 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||| || ||| ||||||| |||| ||||| |
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|
| T |
12483041 |
ctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaacgaaagaatgtgaatccaaatcggaatc |
12482964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 12589727 - 12589688
Alignment:
| Q |
112 |
aaggtgatatgatgaggaaaatttggaacaacaaaggaac |
151 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12589727 |
aaggtgatacgatgaggaaaatttggaacaacaaaggaac |
12589688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 141
Target Start/End: Original strand, 48958667 - 48958794
Alignment:
| Q |
14 |
gttcactgaagttgttgatgattagtgctttacttttaagcaccgtctcaagcatcattcccatgaatataccgattacctttggtggttttccacacaa |
113 |
Q |
| |
|
||||| |||||||||||||||| ||| | |||||||| || | ||||||||||||||| |||||||| || || |||||| || ||| |||||| |
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| T |
48958667 |
gttcaatgaagttgttgatgatgagtcccttacttttgaggattgtctcaagcatcatttccatgaatccggtgaatatctttggcggctttgtacacaa |
48958766 |
T |
|
| Q |
114 |
ggtgatatgatgaggaaaatttggaaca |
141 |
Q |
| |
|
|||||| ||||||||||||||||||| |
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|
| T |
48958767 |
ggtgatggaatgaggaaaatttggaaca |
48958794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 48965939 - 48966005
Alignment:
| Q |
104 |
ttccacacaaggtgatatgatgaggaaaatttggaacaacaaaggaacttgaatccgaatcagaatc |
170 |
Q |
| |
|
||||| ||||||||||| | ||||| |||||| |||||||||| |||| ||||| ||||||||||| |
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|
| T |
48965939 |
ttccagacaaggtgatagggtgaggtaaatttcgaacaacaaatgaacccgaatctgaatcagaatc |
48966005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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