View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7171_low_3 (Length: 453)

Name: NF7171_low_3
Description: NF7171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7171_low_3
NF7171_low_3
[»] chr7 (3 HSPs)
chr7 (1-429)||(28216794-28217231)
chr7 (1-425)||(28237666-28238083)
chr7 (1-429)||(28232837-28233275)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 28216794 - 28217231
Alignment:
Q  1 ctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaa 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||    
T  28216794 ctattttcaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccaatacagattgaaattggtccgtaatcaccttccgaagtaa 28216893  T
Q  101 agcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtcc 189  Q
    |||| ||||           |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  28216894 agcacagcgaaggttgtatgccacaagcatctcactagccttttccaacccagactccttcacctcctgcacat-ttttgtgaagcttagattgctgtcc 28216992  T
Q  190 acaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaatctttttcctagata 289  Q
    |||||||| |||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  28216993 acaaaacccattccatcaaaacacctgtcccacagcgatgctttttcagtctcttccattgggacacacgtcttctccttcttaatctttttcctaggta 28217092  T
Q  290 aaggaagaaccaccttagaattgcatgcagcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctg 389  Q
    ||||||||||||||||||||| |||||||||||  ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28217093 aaggaagaaccaccttagaatcgcatgcagcggaatcattgttc-aaaggtggtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctg 28217191  T
Q  390 agttccccccaccttttctcttgagcttgcagattgtaac 429  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  28217192 agtttcccccaccttttctcttgagcttgcagattgtaac 28217231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 28237666 - 28238083
Alignment:
Q  1 ctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaa 100  Q
    ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28237666 ctattttcaatttttctttggttgcattcagttcgtcttggcagttgctttcatgtcctagtacagattgaaattggtccataatcaccttcccaagtaa 28237765  T
Q  101 agcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtcc 189  Q
    |||||||||           |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  28237766 agcagagcgaaggttgtacgccacaagcatctcactagctttttccaacccagactccttcacctcctgcacatcttttgcgaagcatagatttctgtcc 28237865  T
Q  190 acaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaatctttttcctagata 289  Q
    |||||| | |||||||| || ||||  |||| |||||||||                ||||||||||| || ||||||||||||||| ||||||||| |     
T  28237866 acaaaatccattccatcaaacctcccatcccacagcgatgc----------------attgggacacaagt-ttctccttcttaatccttttcctaggtg 28237948  T
Q  290 aaggaagaaccaccttagaattgcatgcagcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctg 389  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| ||    
T  28237949 aaggaagaacagccttagaatcgcatgcagcggcctcattgttcaaa-ggttgtgcagcaataggttctgcgtctgaaagtgacggtgacccctcctttg 28238047  T
Q  390 agttccccccaccttttctcttgagcttgcagattg 425  Q
    |||| |||||||||||||||||||||||||||||||    
T  28238048 agtttcccccaccttttctcttgagcttgcagattg 28238083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 28232837 - 28233275
Alignment:
Q  1 ctatttttaatttttctttggttgcattcagttcgtctcggcggttgctttcatgtcccagtacagattgaaattggtccataatcaccttcccaagtaa 100  Q
    ||||||| |||||| ||||||||||| ||||||||||| ||| |||||| | |||||||| || || ||| ||||||||| |||||||||||||||||||    
T  28232837 ctattttcaattttcctttggttgcaatcagttcgtcttggcagttgctatgatgtcccactaaagcttggaattggtccgtaatcaccttcccaagtaa 28232936  T
Q  101 agcagagcg-----------ccacaagcatatcactagccttttccaacccagactccttcacctcctgcacatcttttgcgaagcttagattgctgtcc 189  Q
    |||||||||           ||||||| || |||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  28232937 agcagagcgaaggctgtacgccacaagaatctcaccagctttttccaacccagactccttcacctcctgcacgtcttttgtgaagcttagattgctgtcc 28233036  T
Q  190 acaaaacctattccatcgaaactcctgtcccgcagcgatgctttatcagtctcttccattgggacacacgtcttctccttcttaatctttttcctagata 289  Q
    |||||||| ||||||||||| |||||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |     
T  28233037 acaaaacccattccatcgaacctcctgtcccacagcgatgctatatcagtcccttccattgggacacaagtcttctccttcttaatccttttcctaggtg 28233136  T
Q  290 aaggaagaaccaccttagaattgcatgcagcggcctcattgttcaaaaggtagtgcagcaataggttctgtgtctgaaagtgacggtgacccctcctctg 389  Q
    ||| ||||||||||||||||   |||||||| |||   |||||| ||| || ||||||||||||||||| |||||||||||||||||| ||| | || ||    
T  28233137 aagaaagaaccaccttagaaccacatgcagctgccatgttgttc-aaacgtggtgcagcaataggttctttgtctgaaagtgacggtggcccattctttg 28233235  T
Q  390 agttccccccaccttttctcttgagcttgcagattgtaac 429  Q
    || | || ||||||||||| ||||| |||| |||||||||    
T  28233236 agcttccgccaccttttcttttgagtttgcggattgtaac 28233275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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