View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7171_low_8 (Length: 305)

Name: NF7171_low_8
Description: NF7171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7171_low_8
NF7171_low_8
[»] chr8 (2 HSPs)
chr8 (18-168)||(44808214-44808364)
chr8 (217-305)||(44807969-44808057)
[»] chr2 (3 HSPs)
chr2 (18-168)||(28134796-28134946)
chr2 (217-305)||(28135115-28135203)
chr2 (191-219)||(28135001-28135029)
[»] chr3 (3 HSPs)
chr3 (18-167)||(2231697-2231846)
chr3 (217-305)||(2231439-2231526)
chr3 (191-219)||(2231609-2231637)
[»] chr6 (2 HSPs)
chr6 (218-272)||(2110827-2110881)
chr6 (255-305)||(2110756-2110806)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 44808364 - 44808214
Alignment:
Q  18 atcatctttgttttcagaacgtaaaagtttttccaatatgctcgcaacaccctctggctcatccaagaacataagacactgacaaatgctcagataatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44808364 atcatctttgttttcagaacgtaaaagtttttccaatatgcttgcaaccccctctggctcatccaagaacataagacactgacaaatgctcagataatct 44808265  T
Q  118 ggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaaca 168  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  44808264 ggtgaaggaagcttttgaaatactttaacaaggagacggagaacctgaaca 44808214  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 44808057 - 44807969
Alignment:
Q  217 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattc 305  Q
    ||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| |||||||||    
T  44808057 attaaaatcataaaaatttcaattgaatatagctcaatgactaaaattaaagggatgaaaagggaagggaagattttccggatatattc 44807969  T

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Target: chr2 (Bit Score: 131; Significance: 6e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 28134796 - 28134946
Alignment:
Q  18 atcatctttgttttcagaacgtaaaagtttttccaatatgctcgcaacaccctctggctcatccaagaacataagacactgacaaatgctcagataatct 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28134796 atcatctttgttttcagaacgtaaaagtttttccaatatgctcgcaaccccctctggctcatccaagaacatatgacactgacaaatgctcagataatct 28134895  T
Q  118 ggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaaca 168  Q
    |||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  28134896 ggtgaaggaagcttttgaaatactttaacaagcaggcggagaacctgaaca 28134946  T

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Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 217 - 305
Target Start/End: Original strand, 28135115 - 28135203
Alignment:
Q  217 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattc 305  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  28135115 attaaaatcataaaaatttcaatggaatatagctcaatatctaaaattaaagggatgaaaaaggaagggaagattttccggatatattc 28135203  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 28135001 - 28135029
Alignment:
Q  191 tcttcataaatatttccagcacaaacatt 219  Q
    |||||||||||||||||||||||||||||    
T  28135001 tcttcataaatatttccagcacaaacatt 28135029  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 2231846 - 2231697
Alignment:
Q  18 atcatctttgttttcagaacgtaaaagtttttccaatatgctcgcaacaccctctggctcatccaagaacataagacactgacaaatgctcagataatct 117  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2231846 atcatctttgttttcacaacgtaaaagtttttccaatatgctcgcaaccccctctagctcatccaagaacataagacactgacaaatgctcagataatct 2231747  T
Q  118 ggtgaaggaagcttttgaaatactttaacaaggagatggagaacctgaac 167  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  2231746 ggtgatggaagcttttgaaatactttaacaaggagacggagaacctgaac 2231697  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 2231526 - 2231439
Alignment:
Q  217 attaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattc 305  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2231526 attaaaatcataaaaatt-caatggaatatagctcaataactaaaattaaagggatgaaaaaggaagggaagattttccggatatattc 2231439  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 2231637 - 2231609
Alignment:
Q  191 tcttcataaatatttccagcacaaacatt 219  Q
    |||||||||||||||||||||||||||||    
T  2231637 tcttcataaatatttccagcacaaacatt 2231609  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 272
Target Start/End: Complemental strand, 2110881 - 2110827
Alignment:
Q  218 ttaaaatcattaaaatttcaatggaatatagctcaataactaaaattaaaggaat 272  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2110881 ttaaaatcataaaaatttcaatggaatatagctcaataactaaaattaaaggaat 2110827  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 255 - 305
Target Start/End: Complemental strand, 2110806 - 2110756
Alignment:
Q  255 aactaaaattaaaggaatgaaaaaggaagggaagattttccagatatattc 305  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2110806 aactaaaattaaaggaatgaaaaaggaagggaagattttccggatatattc 2110756  T

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