View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7171_low_9 (Length: 266)
Name: NF7171_low_9
Description: NF7171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7171_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 40023135 - 40023389
Alignment:
| Q |
1 |
tctcctccatctcaatacccattcttaagtgtaacttctcacccttacgtggccatggttgtttacatagatcctgata----cttccattttttgttaa |
96 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
40023135 |
tctcctccatctcaatacccattcttaagtgtaacttctcacccttacatggccatggttgtttacatagatcctgatactcccttccattttcagttaa |
40023234 |
T |
|
| Q |
97 |
agcaatgataaacctacacgatgtccaagcattcattaatgtctcaactagaagcctgattattattagcacacattttggttcatgtgtgtcgtcgtaa |
196 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40023235 |
agcaatgacaaacctacacgatgtccaagcattcattaatgtctcgactagaagcctg---attattaggacacattttggttcatgtgtgtcgtcgtaa |
40023331 |
T |
|
| Q |
197 |
ccctagctcccctttgtcaccaaaatatgatcgatggtagcctatgtcatacccttctt |
255 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
40023332 |
ccctagctcccctttgtcaccaaaata-gatcgatggtagcctatgtcataaccttctt |
40023389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University