View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7172_high_1 (Length: 327)
Name: NF7172_high_1
Description: NF7172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7172_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 47143763 - 47144077
Alignment:
| Q |
1 |
ttcttatactactatattgatatttttgacttgcatggcttatggctaattgaattcttggaataactcgaaagacatgctctatactatagttctgttt |
100 |
Q |
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| T |
47143763 |
ttcttatactactatattgatatttttgacttgcatggcttatggctaattgaattcttggaataactcgaaagacatgctctatactatagttctgttt |
47143862 |
T |
|
| Q |
101 |
aagaatagtcttttttgcttctacgcttcgctgtgcactgtagcattgcagctataatatttattgtaatggagacatctctttatcgtacgacaaaagg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47143863 |
aagaatagtcttttctgcttctacgcttcgctgtgcactgtagcattgcagctataatatttattgtaatggagacatctctttatcgtacgacaaaagg |
47143962 |
T |
|
| Q |
201 |
aagaactgtgttgtccttatggattgtgttgtatattagtagtaaattatgttggaaagctcgtacttccataattgtcgtgtcgtgttacagttttcgg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47143963 |
aagaactgtgttgtccttatggattgtgttgtatattagtagtaaattatgttggaaagctcgtacttccataattgtcgtgtcgtgttacagttttcgg |
47144062 |
T |
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| Q |
301 |
tctcttaaccacagg |
315 |
Q |
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||||||||||||||| |
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| T |
47144063 |
tctcttaaccacagg |
47144077 |
T |
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