View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7172_low_2 (Length: 474)
Name: NF7172_low_2
Description: NF7172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7172_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 102 - 469
Target Start/End: Complemental strand, 23211199 - 23210832
Alignment:
| Q |
102 |
gttgcgtagatacttgtagggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttctcgagctcccctgatgatcct |
201 |
Q |
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| T |
23211199 |
gttgcgtagatacttgtagggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttctcgagctcccctgatgatcct |
23211100 |
T |
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| Q |
202 |
acagtgatatcatagtcattggttcgccgaatgactcattatgccggaagtcttcctaacaataatggtagggcaatgtgtcatgtttagtgcggccaat |
301 |
Q |
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| T |
23211099 |
acagtgatatcatagtcattggttcgccgaatgactcattatgccggaagtcttcctaacaataatggtagggcaatgtgtcatgtttagtgcggccaat |
23211000 |
T |
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| Q |
302 |
tgaggaggagcatgtacacatatgaatggatggatgagagattattatgtaacaagtgtgcgcagaagtctcatattagatgaaaaaatggatgttgaac |
401 |
Q |
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| T |
23210999 |
tgaggaggagcatgtacacatatgaatggatggatgagaggttattatgtaacaagtgtacgcagaagtctcatattagatgaaaaaatggatgttgaac |
23210900 |
T |
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| Q |
402 |
actatataagttataagactcataactcaatgtcttaagatttaggttaagatgtgatgtccatctca |
469 |
Q |
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| T |
23210899 |
actatataagttataagacccgtaactcaatgtcttaagatttaggttaagatgtgatgtccaactca |
23210832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 38259380 - 38259343
Alignment:
| Q |
365 |
agaagtctcatattagatgaaaaaatggatgttgaaca |
402 |
Q |
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| T |
38259380 |
agaagtctcatattagatgaaaaaatagatgttgaaca |
38259343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Complemental strand, 41039019 - 41038977
Alignment:
| Q |
134 |
tgtccaactcatttatatggttattcttgacccaatgtggatg |
176 |
Q |
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| T |
41039019 |
tgtctaactcatttacatggttattcttgacccaatgcggatg |
41038977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 47157597 - 47157690
Alignment:
| Q |
121 |
ggttaagttgaagtgtccaactcatttatatggttattcttgacccaatgtggatgtttc-tcgagctcccctgatgatcctacagtgatatca |
213 |
Q |
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| T |
47157597 |
ggttaagatgcagtatccaactcatttgtgtgattgttcttgacccaatttggatgattcatctggctcccctcatgatccaacagtggtatca |
47157690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 378 - 410
Target Start/End: Complemental strand, 31503547 - 31503515
Alignment:
| Q |
378 |
tagatgaaaaaatggatgttgaacactatataa |
410 |
Q |
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| T |
31503547 |
tagatgagaaaatggatgttgaacactatataa |
31503515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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