View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7172_low_5 (Length: 245)
Name: NF7172_low_5
Description: NF7172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7172_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 37618085 - 37617875
Alignment:
| Q |
19 |
ccttgcttctaaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacccacttcaggactaaggtgtgggattaactcactt |
118 |
Q |
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| T |
37618085 |
ccttgcttctaaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacccacttcaggactaaggtgtgggattaactcactt |
37617986 |
T |
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| Q |
119 |
agacgagcccttgaaaattccatggcnnnnnnnaatatttcttcatcttctgtccctaaatatgatgcctcatataaactcaacataccccaaacatctt |
218 |
Q |
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| T |
37617985 |
agacgagcccttgaaaattccatggctttttttaatatttcttcatcttctgtccctaaatatgatgcctcatataaactcaacataccccaaacatctt |
37617886 |
T |
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| Q |
219 |
tggtgagtgat |
229 |
Q |
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|||| |||||| |
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| T |
37617885 |
tggtaagtgat |
37617875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 37626467 - 37626258
Alignment:
| Q |
19 |
ccttgcttctaaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacccacttcaggactaaggtgtgggattaactcactt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| || |
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| T |
37626467 |
ccttgcttctaaccttgccattcttaggtgctttggaagtgttaaggatttggcaatgttcctacctatttcaggactaaggtgtgggattaactcattt |
37626368 |
T |
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| Q |
119 |
agacgagcccttgaaaattccatggcnnnnnnnaatatttcttcatcttctgtccctaaatatgatgcctcatataaactcaacataccccaaacatctt |
218 |
Q |
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||| |||| |||||||| | |||||| ||||||||||||||||| || ||||||| |||||| ||||||| || ||||||||||||| ||||| |
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| T |
37626367 |
agatgagcacttgaaaacttcatggctctctttaatatttcttcatcttcagttcctaaatgtgatgcttcatataggcttaacataccccaaatatctt |
37626268 |
T |
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| Q |
219 |
tggtgagtga |
228 |
Q |
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| T |
37626267 |
tggtgagtga |
37626258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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