View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7173_high_1 (Length: 772)

Name: NF7173_high_1
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7173_high_1
NF7173_high_1
[»] chr5 (3 HSPs)
chr5 (15-753)||(5258552-5259290)
chr5 (649-688)||(40355247-40355286)
chr5 (591-637)||(26045267-26045313)
[»] scaffold1640 (1 HSPs)
scaffold1640 (648-700)||(1130-1182)
[»] chr7 (3 HSPs)
chr7 (648-700)||(25768714-25768766)
chr7 (648-700)||(25774277-25774329)
chr7 (669-704)||(25774171-25774206)
[»] chr2 (3 HSPs)
chr2 (584-641)||(26836243-26836300)
chr2 (648-701)||(15119769-15119822)
chr2 (649-698)||(15446874-15446923)
[»] chr1 (2 HSPs)
chr1 (664-701)||(27939179-27939216)
chr1 (648-685)||(14214558-14214595)
[»] chr8 (1 HSPs)
chr8 (595-641)||(7428898-7428944)
[»] chr4 (2 HSPs)
chr4 (648-685)||(20215575-20215612)
chr4 (648-685)||(20788044-20788081)


Alignment Details
Target: chr5 (Bit Score: 655; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 15 - 753
Target Start/End: Complemental strand, 5259290 - 5258552
Alignment:
Q  15 cacagatgaaagaaacgtgtttgtcactatacagtctacacacatcatttcctcattagtacacacacactttgggaaacttaatgaaaattgatacctt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5259290 cacagatgaaagaaacgtgtttgtcactatacagtctacacacatcatttcctcattagtacacacaaactttgggaaacttaatgaaaattgatacctt 5259191  T
Q  115 gttgtcttagattattgaattgtccaatgtcgctcaaccaccattatactcaaattattagattccactggagttaatctaccctatattattaattaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5259190 gttgtcttagattattgaattgtccaatgtcgctcaaccaccattatactcaaattattagattccactggagttaatctaccctatattattaattaat 5259091  T
Q  215 gtttattatttcttgtagtattgttttctgacaatgatggcattaactaaaagagtgtctttcatatggcctggctaactggtcgctaactttgctatag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5259090 gtttattatttcttgtagtattgttttctgacaatgatggcattaactaaaagagtgtctttcatatggcctggctaactggtcgctaactttgctatag 5258991  T
Q  315 ttgttacttttgcttgcataagccccccacattcagctatatgatactttttatttcttatttttggaaccaaccacannnnnnnagcttttgaatattt 414  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  5258990 ttgttacttttgcttgcataagc-ccccacattcagctatatgatactttttatttcttatttttggaaccaaccacaattttttagcttttgaatattt 5258892  T
Q  415 aaagttaaatggtcataagtgctaacacttttt-aaacgataatctatattcaaaaactatttgttatatgctcaataaaagtatttataatgcatgatt 513  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5258891 aaagttaaatggtcataagtgctaacactttttcaaacaataatctatattcaaaaactatttgttatatgctcaataaaagtatttataatgcatgatt 5258792  T
Q  514 taagattcatttttaaaatagttgttagtattaaataaatgaagtacatttccaccaaaaactaatgaagtacataatccggttactattataagcagaa 613  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5258791 taagattcatttttaaaatagttgttagtattaaataaatgaagtaaatttcaaccaaaaactaatgaagtacataatccggttactattataagcagaa 5258692  T
Q  614 attcatactttagattgattcaataaatactagcgaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtatattttgtgatggtt 713  Q
    ||| ||||||||||||||||||||||||||||| ||||||||  |||||||| ||||||||||||||||||||||  |||||||||||||||||||||||    
T  5258691 attaatactttagattgattcaataaatactagtgaatgaacataaaatgtggatttttgcttataatagtgtccagatgatgtatattttgtgatggtt 5258592  T
Q  714 tagaattgcgtagcatattaattcgagaaatccacagcac 753  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  5258591 tagaactgcgtagcatattaattcgagaaatccacagcac 5258552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 649 - 688
Target Start/End: Original strand, 40355247 - 40355286
Alignment:
Q  649 aatgaaccaaaaatgtgaatttttgcttataatagtgtcc 688  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  40355247 aatgaaccaaaaatgtgagtttttgcttataatagtgtcc 40355286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 591 - 637
Target Start/End: Original strand, 26045267 - 26045313
Alignment:
Q  591 tccggttactattataagcagaaattcatactttagattgattcaat 637  Q
    |||||||||||||||||||| ||||| ||| |||||||| |||||||    
T  26045267 tccggttactattataagcaaaaatttatattttagattcattcaat 26045313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1640 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1640
Description:

Target: scaffold1640; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 700
Target Start/End: Complemental strand, 1182 - 1130
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtata 700  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||||||    
T  1182 gaatgaatctaaaatgtgtatttttgcttataatagtgaccgaatgatgtata 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 700
Target Start/End: Original strand, 25768714 - 25768766
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtata 700  Q
    ||||||| | |||||||| ||||||||||||||||||| ||||||||||||||    
T  25768714 gaatgaatctaaaatgtgtatttttgcttataatagtgaccgaatgatgtata 25768766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 648 - 700
Target Start/End: Original strand, 25774277 - 25774329
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtata 700  Q
    ||||||| | |||||||| ||||||||||||||||||| | ||||||||||||    
T  25774277 gaatgaatctaaaatgtgtatttttgcttataatagtgactgaatgatgtata 25774329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 669 - 704
Target Start/End: Complemental strand, 25774206 - 25774171
Alignment:
Q  669 ttttgcttataatagtgtccgaatgatgtatatttt 704  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25774206 ttttgcttataatagtgaccgaatgatgtatatttt 25774171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 641
Target Start/End: Complemental strand, 26836300 - 26836243
Alignment:
Q  584 tacataatccggttactattataagcagaaattcatactttagattgattcaataaat 641  Q
    ||||| |||||||||||| |||||||| |||| |||| |||||||| |||||||||||    
T  26836300 tacatcatccggttactaatataagcaaaaatccatattttagattcattcaataaat 26836243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 701
Target Start/End: Complemental strand, 15119822 - 15119769
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgtatat 701  Q
    ||||||| | ||||||| |||||||||||||||||||| ||||| | |||||||    
T  15119822 gaatgaatctaaaatgttaatttttgcttataatagtgaccgaagggtgtatat 15119769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 698
Target Start/End: Original strand, 15446874 - 15446923
Alignment:
Q  649 aatgaaccaaaaatgtgaatttttgcttataatagtgtccgaatgatgta 698  Q
    |||||||| ||||  ||||||||| |||||||||||| ||||||||||||    
T  15446874 aatgaacctaaaaaatgaatttttacttataatagtgaccgaatgatgta 15446923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 664 - 701
Target Start/End: Complemental strand, 27939216 - 27939179
Alignment:
Q  664 tgaatttttgcttataatagtgtccgaatgatgtatat 701  Q
    |||||||||||||||||||||| |||||||||||||||    
T  27939216 tgaatttttgcttataatagtgaccgaatgatgtatat 27939179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Complemental strand, 14214595 - 14214558
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtg 685  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  14214595 gaatgaacctaaaaagtgaatttttgcttataatagtg 14214558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 595 - 641
Target Start/End: Original strand, 7428898 - 7428944
Alignment:
Q  595 gttactattataagcagaaattcatactttagattgattcaataaat 641  Q
    |||||||||||||||| ||||||||| ||||| || |||||||||||    
T  7428898 gttactattataagcaaaaattcatattttaggttcattcaataaat 7428944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Complemental strand, 20215612 - 20215575
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtg 685  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  20215612 gaatgaacctaaaatgtcaatttttgcttataatagtg 20215575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 648 - 685
Target Start/End: Complemental strand, 20788081 - 20788044
Alignment:
Q  648 gaatgaaccaaaaatgtgaatttttgcttataatagtg 685  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  20788081 gaatgaacctaaaatatgaatttttgcttataatagtg 20788044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University