View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7173_high_11 (Length: 237)
Name: NF7173_high_11
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 28695618 - 28695844
Alignment:
| Q |
1 |
tgttagaacaaaaattctctacactgtttctttctgaaatgtatttagctacccttaaacattcaattcacatttcacctactttgttccaccatttaaa |
100 |
Q |
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| T |
28695618 |
tgttaaaacaaaaattctctacactgtttctttctgaaatgtatttagttacccttaaacattcaattcacatttcacctactttgttccaccatttaaa |
28695717 |
T |
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| Q |
101 |
ccaatcctctgcatagatgatcgataccaattcagtataatagggaaaatagcaggaaatagtggtagaaaagagtaataaaacactgttttattgatat |
200 |
Q |
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| T |
28695718 |
ccaatcctctgcatagatgatcgataccaattcagtataatagggaaaatagcaggaaatagtggtagaaaagagtaataaaacactgttttattgatat |
28695817 |
T |
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| Q |
201 |
caagcaaaatcagagtgtttctgatga |
227 |
Q |
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| T |
28695818 |
caagcaaaatcagagtgtttctgatga |
28695844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 28695462 - 28695387
Alignment:
| Q |
152 |
gcaggaaatagtggtagaaaagagtaataaaacactgttttattgatatcaagcaaaatcagagtgtttctgatga |
227 |
Q |
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|||| ||||| |||||||||| ||||||||||||||||| ||| |||||||| ||| |||| |||| ||||||||| |
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| T |
28695462 |
gcagaaaatattggtagaaaatagtaataaaacactgttatatcgatatcaaccaacatcaaagtgattctgatga |
28695387 |
T |
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