View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7173_high_13 (Length: 221)
Name: NF7173_high_13
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_high_13 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr2 (6 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 35051839 - 35051632
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
35051839 |
gtgtctatcaaacttgattacaagcaagtggttgacaacataactaggagactcaacaccaatttcaagtttgacgcaattattgatatttgaaaaactt |
35051740 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttc |
213 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
35051739 |
cagttagaacctaccaaaactttaagaaaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacgtcattattttatgctagttc |
35051640 |
T |
|
| Q |
214 |
ccacattc |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
35051639 |
ccacattc |
35051632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 36526459 - 36526258
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||| |||| | ||| || ||||| |||||||||||| ||| | ||| || ||||||| |
|
|
| T |
36526459 |
gtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaactt |
36526360 |
T |
|
| Q |
114 |
cagtta-gaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagtt |
212 |
Q |
| |
|
|| ||| ||| | | ||||||||||||| |||||||||||| |||||| ||||||| ||| ||| |||||||| | | ||||||| ||||||||||| |
|
|
| T |
36526359 |
cacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttagctcgggcgtcattatcttatgctagtt |
36526261 |
T |
|
| Q |
213 |
ccc |
215 |
Q |
| |
|
||| |
|
|
| T |
36526260 |
ccc |
36526258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 8237247 - 8237395
Alignment:
| Q |
35 |
aagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaacttcagttagaacctaccaaaact |
134 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||| ||| | |||||| ||||||| || ||| || | |||| ||||||||| |||||| |||||||| | |
|
|
| T |
8237247 |
aagcaagtggttcacacaatatctaggagacccaataccaattttgtgtttggagctatttttca-attttgaaaacttcacttagaatttaccaaaatt |
8237345 |
T |
|
| Q |
135 |
ttaagacaagtttcattagaagacaagaaaataatattggccatttgttagc |
186 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||||||||| | | |||||||| |
|
|
| T |
8237346 |
ttaagataagtttcattag--gacaagcaaataatattgccgacttgttagc |
8237395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 37923683 - 37923595
Alignment:
| Q |
128 |
caaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttccca |
216 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||||||| ||| ||| ||||||| | | | ||||||| ||||||||||||||| |
|
|
| T |
37923683 |
caaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttagttagggcgtcattatcttatgctagttccca |
37923595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 19920702 - 19920909
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
|||||||| |||||||||| ||||||| ||||| || |||||||||| |||||||||||||||| || ||| || || || | |||||||| ||||| | |
|
|
| T |
19920702 |
gtgtctattgaacttgattgcaagcaaatggttcactacataactagaagactcaacatcaattccacgttcggtgctatcaatgatatttgcaaaacat |
19920801 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttc |
213 |
Q |
| |
|
|| |||||| ||| |||||||||||| | |||||||||| | ||||| ||||| | || ||||||||||||||| ||| ||||||| |||| | ||||| |
|
|
| T |
19920802 |
cacttagaatctatcaaaactttaagctaggtttcattaggaaacaagcaaatagtgtttgccatttgttagcaaggacgtcattatcttataccagttc |
19920901 |
T |
|
| Q |
214 |
ccacattc |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
19920902 |
ccacattc |
19920909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 24588735 - 24588614
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||| ||| ||||||||| ||| ||| |
|
|
| T |
24588735 |
gtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattcttgatatttgtaaagctt |
24588636 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactt |
135 |
Q |
| |
|
|| |||||| ||| |||||||| |
|
|
| T |
24588635 |
cacttagaatctaacaaaactt |
24588614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 8295013 - 8295151
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||| || || |||| || || ||||||||||||||||||||||||||| || ||||||||| ||| ||| |
|
|
| T |
8295013 |
gtgtctatcgaacttgattgcaagcaagtgatttacggcatagcttggggactcaacatcaatttcatgtttggcgttgttcttgatatttgcaaagctt |
8295112 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactttaagacaagtttcatta |
152 |
Q |
| |
|
|| |||||| || |||||||||||||| |||||| |||| |
|
|
| T |
8295113 |
cacttagaatctgccaaaactttaagataagttttatta |
8295151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 9227396 - 9227250
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaa--gtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaac |
111 |
Q |
| |
|
||||||||||||||||||| ||||||| ||| | || || |||||| |||||||| | |||||||||||||| ||| ||||||| ||||| ||||| |
|
|
| T |
9227396 |
gtgtctatcgaacttgattgcaagcaaatgtgctggaaggcacaactagaagactcaata-caatttcatgtttgacgctattattgctatttgtaaaac |
9227298 |
T |
|
| Q |
112 |
ttcagttagaacctaccaaaactttaagacaagtttcattagaagaca |
159 |
Q |
| |
|
|||| |||||| ||| ||||||||||||| ||||||||| ||||||| |
|
|
| T |
9227297 |
ttcatttagaatctatcaaaactttaagataagtttcataggaagaca |
9227250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 13922912 - 13923064
Alignment:
| Q |
15 |
tgtctatcgaacttgattacaagcaagtggttga-caacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| | |||| ||||||||||||||| || | |||||| ||| || || |||||| ||| ||| |
|
|
| T |
13922912 |
tgtctatcgaacttgatttcaagtaagtggttgaaccacattcctaggagactcaacactaactcgatgttttgcgttgttctttatatttgtaaagctt |
13923011 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaat |
166 |
Q |
| |
|
|| |||||| ||||||||||||||||| |||||||||||| | ||||| |||| |
|
|
| T |
13923012 |
cacttagaatctaccaaaactttaagataagtttcattaggaaacaagcaaat |
13923064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 37490918 - 37490999
Alignment:
| Q |
128 |
caaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgcta |
209 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||| ||||||| ||| ||| |||||||| | ||| ||||||| | |||||| |
|
|
| T |
37490918 |
caaaactttcagataagtttcattagaagacaagtaaataatgttgtccacttgttagctaggacgtcattatctcatgcta |
37490999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 41652606 - 41652807
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
|||| |||||||||||||| |||| | ||||||||| | |||||||||||||||||| | || ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
41652606 |
gtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttgcaaaactt |
41652705 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaa--ataatattggccatttgttagcaatgacatcattattttatgctagt |
211 |
Q |
| |
|
|| |||||||||||||||||||||||| || ||||||| | | ||||| || ||| ||||| ||||||| |||||| ||||| ||||| || | ||||| |
|
|
| T |
41652706 |
cacttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgctagcaaggacataattatcttgtactagt |
41652805 |
T |
|
| Q |
212 |
tc |
213 |
Q |
| |
|
|| |
|
|
| T |
41652806 |
tc |
41652807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 26917294 - 26917487
Alignment:
| Q |
15 |
tgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaacttc |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||| ||||| ||||||||| ||||| ||||||| ||| ||| ||||||||| ||| |||| |
|
|
| T |
26917294 |
tgtctatcgaacttgattgcaagcaagtggttgacggcatagctaggggactcaacaacaattcaatgtttgacgctattcttgatatttgcaaagcttc |
26917393 |
T |
|
| Q |
115 |
agttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgct |
208 |
Q |
| |
|
| |||||| |||| |||||||||||| |||||| ||||| ||||||| ||||| | ||| |||| | |||||| | | ||||||| ||||||| |
|
|
| T |
26917394 |
acttagaatctacaaaaactttaagataagttttattaggagacaagcaaatagtgttgcccatctactagcaagggcgtcattatcttatgct |
26917487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 39007431 - 39007278
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
||||||||| | |||||| |||||||||||| || | ||| |||||||||| ||| ||||||||||||||| | ||| ||||||||| | | ||| |
|
|
| T |
39007431 |
gtgtctatcaactttgattgtaagcaagtggttaacgatatagctaggagacttgacacaaatttcatgtttggccctattcttgatatttgtagagctt |
39007332 |
T |
|
| Q |
114 |
cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaata |
167 |
Q |
| |
|
|| |||||| ||||| ||| |||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
39007331 |
cacttagaatctacctaaattttaagccaagttttattagaaaacaagaaaata |
39007278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 23270078 - 23270166
Alignment:
| Q |
128 |
caaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttccca |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| ||| || |||||||| | | ||||||| ||||||||||||||| |
|
|
| T |
23270078 |
caaaactttaagataagtttcattagaagacaagcaaataatgttgctcacttgttagctagggagtcattatcttatgctagttccca |
23270166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 43381799 - 43381919
Alignment:
| Q |
14 |
gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt |
113 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||| || ||||||||||| ||||| |||||||| ||| ||||||||||||| || ||||| |
|
|
| T |
43381799 |
gtgtctatcgaacttgattgcaagcaagtggttgacggtataattaagagactcaacaccaattccatgtttgacgctattattgatatttgaacaactt |
43381898 |
T |
|
| Q |
114 |
cagttagaacctaccaaaact |
134 |
Q |
| |
|
|| ||| |||||| ||||||| |
|
|
| T |
43381899 |
cacttaaaacctatcaaaact |
43381919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 35529203 - 35529135
Alignment:
| Q |
16 |
gtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtt |
84 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||||| |
|
|
| T |
35529203 |
gtctattgaacttgattacaagcaagtggttcacgacatcgctaggagactcaacactaatttcatgtt |
35529135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 5460808 - 5461014
Alignment:
| Q |
12 |
atgtgtctatcgaacttgattacaagcaagtggttgaca-------acataactaggagactcaacatcaatttcatgtttggcgcaattattgatattt |
104 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||| |||| ||||| |||||||| ||||| |||||| ||||| ||| | || | || |
|
|
| T |
5460808 |
atgtgtctatcaaaattgattgcaagcaagtggttgacacctaacaacatcgttaggaaactcaacaccaattccatgttcggcgctattctagagactt |
5460907 |
T |
|
| Q |
105 |
aaaaaacttcagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattatttta |
204 |
Q |
| |
|
||| |||| | |||| |||||||||||||||| |||||||||||| ||||||| ||||| | ||| | |||||||| | |||||||||| ||| |
|
|
| T |
5460908 |
gcaaagcttccttgagaatttaccaaaactttaagataagtttcattaggagacaagcaaatattgttgctgacttgttagctagaacatcattatctta |
5461007 |
T |
|
| Q |
205 |
tgctagt |
211 |
Q |
| |
|
||||||| |
|
|
| T |
5461008 |
tgctagt |
5461014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 33026838 - 33026712
Alignment:
| Q |
34 |
caagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaacttcagttagaacctaccaaaac |
133 |
Q |
| |
|
|||||||||| |||||| || | |||| ||||||||| ||||| |||||||||| | ||| ||||||| | ||| ||||| |||||| ||||||||| |
|
|
| T |
33026838 |
caagcaagtgattgacaccacagataggggactcaacaccaattccatgtttggcactattcttgatatccacaaagcttcacttagaatataccaaaac |
33026739 |
T |
|
| Q |
134 |
tttaagacaagtttcattagaagacaa |
160 |
Q |
| |
|
||||| | ||||| ||||| |||||| |
|
|
| T |
33026738 |
tttaaaataagttatattaggagacaa |
33026712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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