View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7173_high_3 (Length: 636)
Name: NF7173_high_3
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_high_3 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 498; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 14 - 619
Target Start/End: Complemental strand, 29612955 - 29612350
Alignment:
| Q |
14 |
catcaacatctggttgacctacattaccaacctctggatcagaacctgaagattcatcaattatttgatccgtgtcgacctcatcttgggaatgtgaaga |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29612955 |
catcaacatctggttgacctacattaccaacctctggatcagaacctgaagattcatcaataatttgatccgtgtcgacctcatcttgggaatgtgaaga |
29612856 |
T |
|
| Q |
114 |
cgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacctaggaaataa |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
29612855 |
cgaatgcataacaaagagtggacaaccaaagattatagcaaccaaaatcagcatccaattgatggtccacagttgaaccacaaggcaacctaggaaataa |
29612756 |
T |
|
| Q |
214 |
gcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttcaggtt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29612755 |
gcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaaagacatcaaagcaaatgcagcattcgaaactaggctcaatatttcaggtt |
29612656 |
T |
|
| Q |
314 |
tcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtggaggg |
413 |
Q |
| |
|
| || |||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
29612655 |
taccgttcacagccttgtcgtaatagaatgagtacactgagatgatcatcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtggatgg |
29612556 |
T |
|
| Q |
414 |
tgagagctgctttacatacaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattg |
513 |
Q |
| |
|
||||| |||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
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|
| T |
29612555 |
tgagaactgctttacaaacaatatggtggtaaagatagccaaggaaaacactccatacagagagaacttgacaatgttccatcttccaattaaacgattg |
29612456 |
T |
|
| Q |
514 |
aaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctccataatgcgttgccactagaaaccttccatgaaatct |
613 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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|
| T |
29612455 |
aaagaagggctctgagcataacacaataggccaaatacacttgacacaaggccaactagtctccaaaatgcgttgccactagaaaccttcgatgaaatct |
29612356 |
T |
|
| Q |
614 |
caatat |
619 |
Q |
| |
|
||||| |
|
|
| T |
29612355 |
gaatat |
29612350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 578
Target Start/End: Complemental strand, 29525163 - 29524602
Alignment:
| Q |
17 |
caacatctggttgacctacattaccaacctctggatcagaacctgaagattcatcaattatttgatccgtgtcgacctcatcttgggaatgtgaagacga |
116 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||| |||||||| |
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|
| T |
29525163 |
caacatctggttgaactgtattaccaacctctggatcagaacctgaagattcatcaataatttgatccctgtcgacctcttcttggtaatgcgaagacga |
29525064 |
T |
|
| Q |
117 |
atgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacctaggaaataagca |
216 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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|
| T |
29525063 |
atgcataacaaagagcgggcaaccaaagattatagcaaccgaaatcagcatccaattgatggtccacagttgaactgctaggcaacctaggaaataagaa |
29524964 |
T |
|
| Q |
217 |
aatatgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcc |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29524963 |
aatatgcctatttcaaatccaaacctgatcagtttggacaagcttaaggatgtcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcc |
29524864 |
T |
|
| Q |
317 |
cattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtggagggtga |
416 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||||||| |||||||| |||| |||| | ||||| ||| ||||| |||||| | ||| |
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|
| T |
29524863 |
cgttcacagccttgtcgtaatagaatgagtacactgagatgatcatcaaaactgtgaagcccgtgtagggttttatatgaccatatcgtgtggatgttga |
29524764 |
T |
|
| Q |
417 |
gagctgctttacatacaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaa |
516 |
Q |
| |
|
|| | |||||||| |||| ||||| |||||||| |||||||||||||| |||||||| ||| |||| | |||||||| ||||||| |||||||||||| |
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|
| T |
29524763 |
gaacggctttacaaacaacatggtagtaaagataaccaaggaaaacaccccatacagaaagaacttgagagtgttccattttccaatgaaacgattgaaa |
29524664 |
T |
|
| Q |
517 |
gaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctcca |
578 |
Q |
| |
|
||| ||||||||| || ||| |||||||| | |||||||||||||| ||||||| |||||| |
|
|
| T |
29524663 |
gaatggctctgagcattacataataggcctactacacttgacacaattccaactattctcca |
29524602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 110 - 579
Target Start/End: Original strand, 29474933 - 29475402
Alignment:
| Q |
110 |
aagacgaatgcataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacctaggaa |
209 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||| | ||||| || || | |||||| |||||||| |||||||||| | | |||||||| ||| |
|
|
| T |
29474933 |
aagacgaatgcataacagaaagcggacaaccaaagaaaagtgcaacaaaaataaacatccagttgatggttaacagttgaactgtaaagcaacctaagaa |
29475032 |
T |
|
| Q |
210 |
ataagcaaatatgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttca |
309 |
Q |
| |
|
||||| |||| || || ||||| ||||| || |||||||| || ||||| || | |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29475033 |
ataagagaatacaccaatctcaaacccaaagttaatcagtttgtgtaaacttaatgaaaccaaagcaaatgcagcatttgaaactatactcaatatttca |
29475132 |
T |
|
| Q |
310 |
ggtttcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatattttgtgg |
409 |
Q |
| |
|
||||| ||||||| ||| ||| || | |||| ||||||||||||||||| |||||| |||||| ||||||||| |||||| ||| |||| |
|
|
| T |
29475133 |
ggttttccattcacagctcggtcatagaaaaatgcgtacactgagatgatcatcaaaacgagaaagctcgagtaagttttgagttgaacatggcgagtgg |
29475232 |
T |
|
| Q |
410 |
agggtgagagctgctttacatacaatatggtgctaaagatagccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacg |
509 |
Q |
| |
|
|||| ||| ||| || ||||||||||| | |||||||| ||||| |||||| |||| ||| |||| | |||| ||| || |||||||||| || |
|
|
| T |
29475233 |
tacgtgaagactgttttgcaaacaatatggtggtgaagatagctaaggacaacaccccataaagaaagatctggaaagctttcaattttccaattaatcg |
29475332 |
T |
|
| Q |
510 |
attgaaagaagggctctgaggataacacaataggccaaatacacttgacacaaggccaactagtctccat |
579 |
Q |
| |
|
|||||||||||||||| ||| |||||| | || || | || |||||||| ||||||||||| ||||||| |
|
|
| T |
29475333 |
attgaaagaagggctcagagcataacaaaccagaccgactatacttgacataaggccaactactctccat |
29475402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 255 - 578
Target Start/End: Original strand, 29528751 - 29529077
Alignment:
| Q |
255 |
caagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccattcagggctttgtcgtaatagaatgagtacactgag |
354 |
Q |
| |
|
||||||||| |||| ||||||||| | ||| || ||||||| ||| | ||| | |||||| ||||| | ||| ||||||| ||||||||||||| || |
|
|
| T |
29528751 |
caagcttaatgacaccaaagcaaacgaagcgtttgaaactacactaagtatgttaggttttccattgacagctctgtcgtagacgaatgagtacacttag |
29528850 |
T |
|
| Q |
355 |
atgatcagcaaaactgcaaagcttatgtaagtttttag---ttgagcatattttgtggagggtgagagctgctttacatacaatatggtgctaaagatag |
451 |
Q |
| |
|
||||||| |||||| |||||| || || ||||||||| |||||||| || | ||| |||| ||||||| || |||||| |||| ||||||| |
|
|
| T |
29528851 |
atgatcaccaaaaccgcaaagattgtgcaagtttttatgaattgagcatgttgtttgggaagtgatgactgctttgcaaacaatacggtggtaaagatga |
29528950 |
T |
|
| Q |
452 |
ccaaggaaaacaccacatacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggctctgaggataacacaataggccaaatac |
551 |
Q |
| |
|
| || || |||| |||| ||| ||| |||||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| || ||||||| ||| |
|
|
| T |
29528951 |
ctaaagatgacactccatagagaaagaacttgaaaggtttccaccttccaattaatcgattgaaagaagggctcagagcataacataacaggccaactac |
29529050 |
T |
|
| Q |
552 |
acttgacacaaggccaactagtctcca |
578 |
Q |
| |
|
|||||||| ||| ||||||| |||||| |
|
|
| T |
29529051 |
acttgacataagcccaactactctcca |
29529077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 121 - 402
Target Start/End: Original strand, 29526611 - 29526892
Alignment:
| Q |
121 |
ataacaaagagtggacaaccaaagattatagcaaccaatatcagcatccaattgatggtccacagttgaacggctaggcaacctaggaaataagcaaata |
220 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||||| || |||| ||||| ||||||||| ||||||||| | | |||||||| |||||||| || |
|
|
| T |
29526611 |
ataacaaagagcagacaaccgtagattatggcaacaaaaatcaatatccagttgatggtcaacagttgaattgtaaagcaacctaagaaataagagaacc |
29526710 |
T |
|
| Q |
221 |
tgcctatttcaaatccaaacttgatcagttttgacaagcttaacgacatcaaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccatt |
320 |
Q |
| |
|
|| || ||||| ||||| || | ||||| ||||||||| |||| || || ||||||||| || ||||||| ||||| ||| || ||||| ||||| |
|
|
| T |
29526711 |
caccaatctcaaacccaaagttagtgagtttgtgcaagcttaaggacaccatagaaaatgcagcgtttgaaactacactcagtatgtcgggttttccatt |
29526810 |
T |
|
| Q |
321 |
cagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactgcaaagcttatgtaagtttttagttgagcatat |
402 |
Q |
| |
|
|| ||| ||||||| ||||||| |||||||||||||||| ||||||||||||| | || ||||||| |||||| ||||| |
|
|
| T |
29526811 |
caaagctctgtcgtagaagaatgaatacactgagatgatcatcaaaactgcaaagagtgtgcaagttttgagttgaacatat |
29526892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 271 - 524
Target Start/End: Complemental strand, 28183848 - 28183592
Alignment:
| Q |
271 |
aaagcaaatgcagcattcgaaactatactcaatatttcaggtttcccattcagggctttgtcgtaatagaatgagtacactgagatgatcagcaaaactg |
370 |
Q |
| |
|
||||||||||||||||| |||| || ||||| ||| | |||||| ||||||| |||| ||| || ||||||||||||||||||| |||| |||||| |
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|
| T |
28183848 |
aaagcaaatgcagcatttgaaattacactcagtatgttaggttttccattcacagcttcgtcatagaagaatgagtacactgagataatcatcaaaacca |
28183749 |
T |
|
| Q |
371 |
caaagcttatgtaag---tttttagttgagcatattttgtggagggtgagagctgctttacatacaatatggtgctaaagatagccaaggaaaacaccac |
467 |
Q |
| |
|
||||| ||||| ||| ||||||||||| ||| ||||| ||||| |||||||||| ||||||||| | ||||| || ||||| ||| | || |
|
|
| T |
28183748 |
caaaggttatgcaagtgttttttagttgaacatggcgcgtggaaggtgatgcctgctttacaactaatatggtggttaagatggctaaggacaacgctac |
28183649 |
T |
|
| Q |
468 |
atacagagagattttgaaaatgttccatcttccaattaaacgattgaaagaagggct |
524 |
Q |
| |
|
||| ||| ||| |||||| ||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
28183648 |
atagagaaagaccttgaaaggattccaccttccaaataatcgattgaaagaagggct |
28183592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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