View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7173_high_4 (Length: 593)

Name: NF7173_high_4
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7173_high_4
NF7173_high_4
[»] chr8 (5 HSPs)
chr8 (1-585)||(9230844-9231428)
chr8 (1-79)||(9231410-9231488)
chr8 (1-79)||(9231470-9231548)
chr8 (1-79)||(9231530-9231608)
chr8 (1-79)||(9231590-9231668)
[»] chr4 (4 HSPs)
chr4 (1-585)||(18351160-18351744)
chr4 (1-405)||(16902500-16902904)
chr4 (1-79)||(18351098-18351178)
chr4 (22-79)||(16902461-16902518)
[»] chr5 (4 HSPs)
chr5 (121-585)||(2914706-2915168)
chr5 (62-431)||(40808035-40808404)
chr5 (1-121)||(2914304-2914423)
chr5 (480-520)||(21584860-21584900)
[»] chr6 (1 HSPs)
chr6 (102-585)||(7999283-7999766)
[»] chr2 (5 HSPs)
chr2 (205-428)||(30242150-30242372)
chr2 (1-136)||(18492777-18492912)
chr2 (1-93)||(6488787-6488879)
chr2 (22-79)||(6488748-6488805)
chr2 (22-79)||(18492894-18492951)
[»] scaffold0689 (2 HSPs)
scaffold0689 (205-585)||(1761-2156)
scaffold0689 (99-168)||(1658-1727)
[»] chr7 (1 HSPs)
chr7 (259-312)||(10627065-10627118)
[»] chr3 (3 HSPs)
chr3 (1-51)||(20635431-20635481)
chr3 (276-343)||(2612073-2612139)
chr3 (22-79)||(20635463-20635520)


Alignment Details
Target: chr8 (Bit Score: 516; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 9231428 - 9230844
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaatgctttgaaaaaggaccactg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||| ||  ||    
T  9231428 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaatgctttgaaaaagggccgatg 9231329  T
Q  101 tatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9231328 tatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttacttacccggacaggacatg 9231229  T
Q  201 aatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatat 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9231228 aatatctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatat 9231129  T
Q  301 tagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  9231128 tagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtg 9231029  T
Q  401 cacgtgtgcgaagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggat 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9231028 cacgtgtgcgaagatattttggaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggat 9230929  T
Q  501 atctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9230928 atctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 9230844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9231488 - 9231410
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||    
T  9231488 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9231548 - 9231470
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||    
T  9231548 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9231608 - 9231530
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||    
T  9231608 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9231668 - 9231590
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||    
T  9231668 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 9231590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 18351160 - 18351744
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaatgctttgaaaaaggaccactg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || |||||||||||||||||||||||||||||||| ||  ||    
T  18351160 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaatgctttgaaaaagggccgatg 18351259  T
Q  101 tatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18351260 tatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttacttacccggacaggacatg 18351359  T
Q  201 aatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatat 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18351360 aatatctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaatttctacaatttgtatccatttttcatgatat 18351459  T
Q  301 tagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18351460 tagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctatacgtgagattttgagtaagtgtcgacacaattttcttgtg 18351559  T
Q  401 cacgtgtgcgaagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggat 500  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18351560 cacgtgtgcgaagatattttggaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaaaccttatccttcttcttgttaccggat 18351659  T
Q  501 atctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18351660 atctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 18351744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 16902500 - 16902904
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaatgctttgaaaaaggaccactg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||       || |||||||||||||||||||||||||||||||| ||  ||    
T  16902500 cagtccttgtttaacaaaagattctgagaaatatttacgatccaaaaagagaaaaaaacacagtccttgtttaacaaaatgctttgaaaaagggccgatg 16902599  T
Q  101 tatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  16902600 tatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttacttacccggacaggacatg 16902699  T
Q  201 aatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatat 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16902700 aatatctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatat 16902799  T
Q  301 tagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16902800 tagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgtgtaagtgtcgacacaattttcttgtg 16902899  T
Q  401 cacgt 405  Q
    |||||    
T  16902900 cacgt 16902904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 18351098 - 18351178
Alignment:
Q  1 cagtccttgtttaacaaaaga-ttct-gagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||       || ||||||||||||||||||    
T  18351098 cagtccttgtttaacaaaagaattcttgagaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 18351178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 16902461 - 16902518
Alignment:
Q  22 ttctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    ||||| ||||||||||||||||||||||||       || ||||||||||||||||||    
T  16902461 ttctgggaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 16902518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 121 - 585
Target Start/End: Original strand, 2914706 - 2915168
Alignment:
Q  121 tagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatattt 220  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||     
T  2914706 tagtgttttttcaactctctcaaaattgaagcaatttcaaccatatataatacaattgttacttacccggacaagacatgaatatctaaatttaatattg 2914805  T
Q  221 ttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaa 320  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2914806 ttagatacttttttagacctattggcaatactacgtgggagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaa 2914905  T
Q  321 ttcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatatttt 420  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2914906 ttcttcggaaaaaattgtgtctttcaccacggaatcctataagtgagattttgagtaagtgtctacacaattttcttgtgcacgtgtgcgaagatatttt 2915005  T
Q  421 agaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggatatctcgttcagacacatctt 520  Q
     ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  2915006 ggaaaatgagtcacca-tgataccaacccatctgagggagttcttcgttttaatccttatccttcttcttgttatcggatatctcgttcag-cacatctt 2915103  T
Q  521 gtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 585  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2915104 ttctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 2915168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 62 - 431
Target Start/End: Original strand, 40808035 - 40808404
Alignment:
Q  62 agtccttgtttaacaaaatgctttgaaaaaggaccactgtatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaac 161  Q
    |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40808035 agtccttgtttaacaaaatgctttgaaaaagggccgatgtatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaac 40808134  T
Q  162 catatataatacaattgttatttacccggacaggacatgaatgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggag 261  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  40808135 catatataatacaattgttacttatccggacaggacatgaatatctaaatttaatatttttagatactcttttagacctattggcgatactacgtaggag 40808234  T
Q  262 tcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctata 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  40808235 tcctaaatttcaacaatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctaca 40808334  T
Q  362 agtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttagaaaatgagt 431  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40808335 agtgagatttcgagtaagtgtcgacacaattttcttgtgcacgtgtgcgaagatattttggaaaatgagt 40808404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2914304 - 2914423
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaatgctttgaaaaaggaccactg 100  Q
    |||||||| |||||||||||||||||||||||||||| | |||||||||||         || || ||||||||||||||||||||||||||| ||  ||    
T  2914304 cagtccttatttaacaaaagattctgagaaatatttaagttccgaaaagagaaaaaatacaa-tcattgtttaacaaaatgctttgaaaaagggccgatg 2914402  T
Q  101 tatagaaactatcaaagaaat 121  Q
    |||||||||||||||||||||    
T  2914403 tatagaaactatcaaagaaat 2914423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 520
Target Start/End: Original strand, 21584860 - 21584900
Alignment:
Q  480 tccttcttcttgttaccggatatctcgttcagacacatctt 520  Q
    |||||||||||||||| |||||||||||||| ||| |||||    
T  21584860 tccttcttcttgttactggatatctcgttcatacatatctt 21584900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 102 - 585
Target Start/End: Complemental strand, 7999766 - 7999283
Alignment:
Q  102 atagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatataatacaattgttatttacccggacaggacatga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||| |    
T  7999766 atagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagtaatttcaaccatatataatacaattgttacttacccggacaggacataa 7999667  T
Q  202 atgtctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatatt 301  Q
    || ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7999666 atatctaaatttaatatttttagatacttttttagacctattgacgatactacgtaggagtcctaaatttcaacaatttgtgtccatttttcatgatatt 7999567  T
Q  302 agggatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgc 401  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  ||| |||||||||| ||    
T  7999566 agagatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacagaatcctataagtgagattttgagtaagtgtttacataattttcttgagc 7999467  T
Q  402 acgtgtgcgaagatattttagaaaatgagtcaccattgatatcgacccatctgagggagttcttcgttttaatccttatccttcttcttgttaccggata 501  Q
    | |||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7999466 atgtgtgcgaagatattttgaaaaatgagtcaccattgatatctacccatctgagggagttcttcgttttagtccttatccttcttcttgttaccggata 7999367  T
Q  502 tctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaatctttgatgat 585  Q
    ||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7999366 tctcgtttagacaaatcttttctttgtttcttgattctctaatgagttacagaaagagttcgaagaagtcaaatctttgatgat 7999283  T

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Target: chr2 (Bit Score: 184; Significance: 3e-99; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 205 - 428
Target Start/End: Original strand, 30242150 - 30242372
Alignment:
Q  205 tctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagg 304  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  30242150 tctaaatttaatatttttagatacttttttagacctattggcgatactacgtaggagtcctaaattttaacaatttgtatc-atttttcatgatattagg 30242248  T
Q  305 gatggatccaagcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacg 404  Q
    |||| |||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30242249 gatgaatccaagcgaattctttggaaaaaattgtgtctttcactacggaatcctataagtgagatttcgagtaagtgtcgacacaattttcttgtgcacg 30242348  T
Q  405 tgtgcgaagatattttagaaaatg 428  Q
    |||||||| ||||||| |||||||    
T  30242349 tgtgcgaatatattttggaaaatg 30242372  T

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Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 18492912 - 18492777
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaatgctttgaaaaaggaccactg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||  ||||||||||||||||||||||||||||||| ||  ||    
T  18492912 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacacggtccttgtttaacaaaatgctttgaaaaagggccgatg 18492813  T
Q  101 tatagaaactatcaaagaaatagtgttttttcaact 136  Q
    ||||||||||||||||||||||||||||||||||||    
T  18492812 tatagaaactatcaaagaaatagtgttttttcaact 18492777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 6488787 - 6488879
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaatgctttgaaaaagg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||    
T  6488787 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagagaaaaaaacatagtccttgtttaacaaaatgctttgaaaaagg 6488879  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 6488748 - 6488805
Alignment:
Q  22 ttctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    ||||| ||||||||||||||||||||||||       || ||||||||||||||||||    
T  6488748 ttctgggaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 6488805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 18492951 - 18492894
Alignment:
Q  22 ttctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    ||||| ||||||||||||||||||||||||       || ||||||||||||||||||    
T  18492951 ttctgggaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 18492894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0689 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0689
Description:

Target: scaffold0689; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 205 - 585
Target Start/End: Original strand, 1761 - 2156
Alignment:
Q  205 tctaaatttaatatttttagatacttttttagacctattggtgatactacgtaggagtcctaaatttcaacaatttgtatccatttttcatgatattagg 304  Q
    ||||||||| ||||||||||||||||||| ||||||||||  ||||||| |||| ||||         || ||||||||||||||||||||||||||| |    
T  1761 tctaaatttgatatttttagatactttttcagacctattgccgatactaagtagcagtc---------aaaaatttgtatccatttttcatgatattatg 1851  T
Q  305 gatggatccaa---------gcgaattcttcgggaaaaattgtgtctttcaccacggaatcctataagtgagatttcgagtaagtgtcgacacaattttc 395  Q
     |||||||  |         ||||||||||| | |||||||||||||| ||| | ||||||  ||||||||||||||||||||||||  ||| |||||||    
T  1852 catggatcagatatatcatggcgaattcttcagaaaaaattgtgtcttccacaatggaatctgataagtgagatttcgagtaagtgtttacataattttc 1951  T
Q  396 ttgtgcacgtgtgcgaagatat--ttta--gaaa--atgagtcaccattgatatcgacccatctgag---------------ggagttcttcgttttaat 474  Q
    || ||      | |||||| ||  || |  ||||  |||||||||||||||||||||| ||||||||               ||||||| ||  || |||    
T  1952 ttctg------tccgaagaaatgattcatcgaaataatgagtcaccattgatatcgacacatctgagatcgccaaatgttcaggagttcctctattcaat 2045  T
Q  475 ccttatccttcttcttgttaccggatatctcgttcagacacatcttgtctttgtttctcgattctctaatgagttacagacagagttcgaagaagtcaaa 574  Q
    |||| |||||||||||||| | |||||||||||||  ||||||||| |||||||||| |||  || || |||||||||||||||||||||| | ||||||    
T  2046 ccttttccttcttcttgttgctggatatctcgttcgtacacatcttctctttgtttcccgagcctatagtgagttacagacagagttcgaaaaggtcaaa 2145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0689; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 1658 - 1727
Alignment:
Q  99 tgtatagaaactatcaaagaaatagtgttttttcaactctctcaaaattgaagcaattccaaccatatat 168  Q
    ||||||||| || |||| || |||||| |||||||||||||||||||  ||| | ||||||| |||||||    
T  1658 tgtatagaacctttcaacgagatagtgctttttcaactctctcaaaacggaatctattccaaacatatat 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 259 - 312
Target Start/End: Complemental strand, 10627118 - 10627065
Alignment:
Q  259 gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10627118 gagtcctaaatttcaacaatttgtatccatttttcatgatattagggatggatc 10627065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 20635481 - 20635431
Alignment:
Q  1 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagag 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20635481 cagtccttgtttaacaaaagattctgagaaatatttacgatccgaaaagag 20635431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 2612139 - 2612073
Alignment:
Q  276 aatttgtatccatttttcatgatattagggatggatccaagcgaattcttcgggaaaaattgtgtctt 343  Q
    ||||||| |||||||||||||||||||||| ||||||| | |||||||||||  ||| ||||||||||    
T  2612139 aatttgtttccatttttcatgatattaggg-tggatccgaacgaattcttcgaaaaatattgtgtctt 2612073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 20635520 - 20635463
Alignment:
Q  22 ttctgagaaatatttacgatccgaaaagagnnnnnnncaaagtccttgtttaacaaaa 79  Q
    ||||| ||||||||||||||||||||||||       || ||||||||||||||||||    
T  20635520 ttctgggaaatatttacgatccgaaaagagaaaaaaacacagtccttgtttaacaaaa 20635463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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