View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7173_high_6 (Length: 383)
Name: NF7173_high_6
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_high_6 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: scaffold0363 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 367
Target Start/End: Original strand, 11790 - 12139
Alignment:
| Q |
18 |
atgtgaatccatatttttgcagttaaggagggagataaaacaaatatttggttcatcatatagttcacgcgttgaactcaacacttcctcaagagattca |
117 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11790 |
atgtgaatccatgtttttgcagttaaggagcgagataaaacaaacgttaggttcatcatatggttcacgcgttgaactcaacacttcctcaagagattca |
11889 |
T |
|
| Q |
118 |
caattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaagcaatttacaatcatgaatttcaacgagtttgagttggggaagat |
217 |
Q |
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||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
11890 |
caattccagacaaccaaaatttgaatgaactgtgaaagtgccggaatagattgaagcaatttacaatcatgaatatcaacgaatttgagttggggaagat |
11989 |
T |
|
| Q |
218 |
acttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctgtaatgacgacagtaaggagatactgtttggaatttcagacaacgt |
317 |
Q |
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|||||| ||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| |||| ||| |||||||||||| | |
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| T |
11990 |
acttaacggtttcaggtaagcttttaatggccatatcaaatagtattaaactctctaatgacgacagtaaggagatgctgtctgggatttcagacaacat |
12089 |
T |
|
| Q |
318 |
aggaatattaacaaagatcaagtgttttagacttgagaagccaggactag |
367 |
Q |
| |
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|||||||| |||||||| ||||| ||||| ||| |||||||||||||| |
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|
| T |
12090 |
aggaatatcaacaaagaccaagttttttacactctggaagccaggactag |
12139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 367
Target Start/End: Complemental strand, 14407063 - 14406714
Alignment:
| Q |
18 |
atgtgaatccatatttttgcagttaaggagggagataaaacaaatatttggttcatcatatagttcacgcgttgaactcaacacttcctcaagagattca |
117 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
14407063 |
atgtgaatccatgtttttgcagttaaggagcgagataaaacaaacgttaggttcatcatatggttcacgcgttgaactcaacacttcctcaagagattca |
14406964 |
T |
|
| Q |
118 |
caattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaagcaatttacaatcatgaatttcaacgagtttgagttggggaagat |
217 |
Q |
| |
|
||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
14406963 |
caattccagacaaccaaaatttgaatgaactgtgaaagtgccggaatagattgaagcaatttacaatcatgaatatcaacgaatttgagttggggaagat |
14406864 |
T |
|
| Q |
218 |
acttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctgtaatgacgacagtaaggagatactgtttggaatttcagacaacgt |
317 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| |||| ||| |||||||||||| | |
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|
| T |
14406863 |
acttaacggtttcaggtaagcttttaatggccatatcaaatagtattaaactctctaatgacgacagtaaggagatgctgtctgggatttcagacaacat |
14406764 |
T |
|
| Q |
318 |
aggaatattaacaaagatcaagtgttttagacttgagaagccaggactag |
367 |
Q |
| |
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|||||||| |||||||| ||||| ||||| ||| |||||||||||||| |
|
|
| T |
14406763 |
aggaatatcaacaaagaccaagttttttacactctggaagccaggactag |
14406714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 25 - 375
Target Start/End: Original strand, 6308038 - 6308388
Alignment:
| Q |
25 |
tccatatttttgcagttaaggagggagataaaacaaatatttggttcatcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattcc |
124 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||| ||| ||||| |||||| ||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
6308038 |
tccaaatttttgcagttaaggagataaataaaacaaggattgggttcctcatatggttcaatcgttgaactcaacactttctcaagagattcacaattcg |
6308137 |
T |
|
| Q |
125 |
agacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaagcaatttacaatcatgaatttcaacgagtttgagttggggaagatacttaat |
224 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||| | || ||||| ||| ||| |||||||||||||||| |
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|
| T |
6308138 |
agacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatcattttacaatcgtaaacatcaacacgttcaagtcggggaagatacttaat |
6308237 |
T |
|
| Q |
225 |
ggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctgtaatgacgacagtaaggagatactgtttggaatttcagacaacgtaggaata |
324 |
Q |
| |
|
|||||||||||||||| ||||| ||| | || ||||||||| || ||| ||||| |||||||||||||| | ||| | ||||||||| |||||||| |
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|
| T |
6308238 |
ggtttcaggcaagcttctaatgtccataccatccagtgttaaagactttaacgacgatagtaaggagatactatctgggaattcagacaatataggaata |
6308337 |
T |
|
| Q |
325 |
ttaacaaagatcaagtgttttagacttgagaagccaggactagagaataat |
375 |
Q |
| |
|
| || |||| | || | ||||| ||| |||| |||||||||| |||||| |
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|
| T |
6308338 |
taaataaaggttaattcttttacactctggaaggcaggactagaaaataat |
6308388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 73 - 309
Target Start/End: Original strand, 5605093 - 5605329
Alignment:
| Q |
73 |
tcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaa |
172 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||| |||||||||| || |||||||||||||||||||| |
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|
| T |
5605093 |
tcatatggttcactcgttgaactgaacacttcctcaagagattcacaatcccagaaaagcaattttggaatgaagcgttgaagtgccggaatagattgaa |
5605192 |
T |
|
| Q |
173 |
gcaatttacaatcatgaatttcaacgagtttgagttggggaagatacttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctg |
272 |
Q |
| |
|
|||||| ||||| | || | ||| || ||||| ||||||||||||| |||||||||||||||||| |||||| || | || ||| ||||| ||| |
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|
| T |
5605193 |
gcaattcacaatagtaaacattaacccgtatgagtcggggaagatacttgatggtttcaggcaagcttataatgggcatcttaatcagtcttaaagtctc |
5605292 |
T |
|
| Q |
273 |
taatgacgacagtaaggagatactgtttggaatttca |
309 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||||| |
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|
| T |
5605293 |
taatgatgatagtaaggagatactgtttgggatttca |
5605329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 73 - 309
Target Start/End: Complemental strand, 5630277 - 5630041
Alignment:
| Q |
73 |
tcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaa |
172 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||| |||||||||| || |||||||||||||||||||| |
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|
| T |
5630277 |
tcatatggttcactcgttgaactgaacacttcctcaagagattcacaatcccagaaaagcaattttggaatgaagcgttgaagtgccggaatagattgaa |
5630178 |
T |
|
| Q |
173 |
gcaatttacaatcatgaatttcaacgagtttgagttggggaagatacttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctg |
272 |
Q |
| |
|
|||||| ||||| | || | ||| || ||||| ||||||||||||| |||||||||||||||||| |||||| || | || ||| ||||| ||| |
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|
| T |
5630177 |
gcaattcacaatagtaaacattaacccgtatgagtcggggaagatacttgatggtttcaggcaagcttataatgggcatcttaatcagtcttaaagtctc |
5630078 |
T |
|
| Q |
273 |
taatgacgacagtaaggagatactgtttggaatttca |
309 |
Q |
| |
|
|||||| || |||||||||||||||||||| |||||| |
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|
| T |
5630077 |
taatgatgatagtaaggagatactgtttgggatttca |
5630041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 5553742 - 5553477
Alignment:
| Q |
73 |
tcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaa |
172 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||||||| | |||| |||||||||||||||| |
|
|
| T |
5553742 |
tcatacagttcacccgttgaacttaacacttcctcaagagattcacaatcccagacactcaaatttggaatgaagcgataaagcgccggaatagattgaa |
5553643 |
T |
|
| Q |
173 |
gcaatttacaatcatgaatttcaacgagtttgagttggggaagatacttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctg |
272 |
Q |
| |
|
|||||||||| | || | ||| | | |||||||||||||||||||| || |||||||| |||||||||||||| | | ||| ||||| || |
|
|
| T |
5553642 |
gcaatttacatttggaaacatgaaccaatcggagttggggaagatacttaagggattcaggcaggcttttaatggccatacacagcagtcttaaaatcac |
5553543 |
T |
|
| Q |
273 |
taatgacgacagtaaggagatactgtttggaatttcagacaacgtaggaatattaacaaagatcaa |
338 |
Q |
| |
|
|||||| || ||||| |||||||||| ||| |||||| |||| ||||||| | ||||| |||||| |
|
|
| T |
5553542 |
taatgatgatagtaaagagatactgtctgggatttcatacaagataggaatttcaacaatgatcaa |
5553477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 209 - 323
Target Start/End: Complemental strand, 5647688 - 5647574
Alignment:
| Q |
209 |
ggggaagatacttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctgtaatgacgacagtaaggagatactgtttggaatttc |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| || || ||| ||||| || ||||||||| |||||||||||||||| ||| | ||| |
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|
| T |
5647688 |
ggggaagatacttaatggtttcgggcaagcttttaatggccatatgaattagatttaaatactttaatgacgatagtaaggagatactgtctgggaattc |
5647589 |
T |
|
| Q |
309 |
agacaacgtaggaat |
323 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
5647588 |
agacaagataggaat |
5647574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 314
Target Start/End: Complemental strand, 32635475 - 32635365
Alignment:
| Q |
204 |
gagttggggaagatacttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctgtaatgacgacagtaaggagatactgtttgga |
303 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||| | || ||||||| ||||| || ||||||||| |||||||| || ||| ||| |
|
|
| T |
32635475 |
gagttggggaagatacataatggtttcaggcaagcttctaatggctatattaaatagtcttaaagactttaatgacgatagtaaggaaatgttgtctggg |
32635376 |
T |
|
| Q |
304 |
atttcagacaa |
314 |
Q |
| |
|
||||||||||| |
|
|
| T |
32635375 |
atttcagacaa |
32635365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 32635579 - 32635509
Alignment:
| Q |
96 |
caacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatag |
166 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||| ||||||||||| || ||| |||||||||| |
|
|
| T |
32635579 |
caacactttctcaagagattcacaattcctgacaatgaaaaatggaatgaactttggaagagccggaatag |
32635509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 13167355 - 13167240
Alignment:
| Q |
200 |
gtttgagttggggaagatacttaatggtttcaggcaagcttttaatggccacatcaaatagtgttaaactctgtaatgacgacagtaaggagatactgtt |
299 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||||||| | ||| | | || | ||||||||| | ||||||||| ||||| |||||| || | |
|
|
| T |
13167355 |
gtttcagttggggaagatacctgatggtttcaggcaagcttctgatgattaaaccagacagtgttaaagagtctaatgacgatagtaacgagatattgct |
13167256 |
T |
|
| Q |
300 |
tggaatttcagacaac |
315 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
13167255 |
tgggatttcagacaac |
13167240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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