View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7173_low_1 (Length: 276)
Name: NF7173_low_1
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_low_1 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 1847670 - 1847921
Alignment:
| Q |
5 |
aacataatgtaagtataaaagatgaaattgtccaaaaattattatcaaattattgtatacatctaaacacacaatttgcaagtaatgtaaactttgagat |
104 |
Q |
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| T |
1847670 |
aacataatgtaagtataaaagatgaaattgtccaaaaattatcataaaattattgtatacatctaaacacacaatttgcaagtaatgtaaactttgagat |
1847769 |
T |
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| Q |
105 |
atcattttctacctccat------gnnnnnnnttatactaattatttaaataagaaattctaaggatgatatcacgaaaatatttattttttgatgttat |
198 |
Q |
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| T |
1847770 |
atcattttctacctccattaaaaaaaaaaatattatactaattatttaaataagaaattataaggatgatatcacgaaaatatttattttttgacgatat |
1847869 |
T |
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| Q |
199 |
aaaattattgtta--nnnnnnnattgtaaactcatacaatggaaatttgttg |
248 |
Q |
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| T |
1847870 |
aaaattattgttatttttttttattgtaaactcatacaatggaaatttgttg |
1847921 |
T |
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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 395929 - 395891
Alignment:
| Q |
8 |
ataatgtaagtataaaagatgaaattgtccaaaaattat |
46 |
Q |
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| T |
395929 |
ataatgtaagtatgaaagatgaaattgtcaaaaaattat |
395891 |
T |
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