View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7173_low_13 (Length: 337)
Name: NF7173_low_13
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 42899315 - 42899010
Alignment:
| Q |
21 |
ctggttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtaggagtag |
120 |
Q |
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| T |
42899315 |
ctggttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcagatgatggttggtaggatggaagtgtagaagtag |
42899216 |
T |
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| Q |
121 |
gaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagaggg |
220 |
Q |
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| T |
42899215 |
gaccatttctagggttagggttttcataaaggtgtagatcttgatccaaacttgaatagtttgaagagagatcaatggatgattgacaaagccaagaggg |
42899116 |
T |
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| Q |
221 |
tatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgtgtttggagattgttcatgttg |
320 |
Q |
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| T |
42899115 |
tatttgtacttcttgttctggccttaacatgttgaaactttgatgctctttcttcaatgtgaagccttggatatcttgagtttggagattgttcatgttg |
42899016 |
T |
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| Q |
321 |
tgatga |
326 |
Q |
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| T |
42899015 |
tgatga |
42899010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 5787617 - 5787666
Alignment:
| Q |
24 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtg |
73 |
Q |
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| T |
5787617 |
gttgcacccatttgagctgctttctgcaacaatgcagtagctgacatgtg |
5787666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 36990900 - 36990837
Alignment:
| Q |
24 |
gttgcacccatctgagctgctttctgtaacaatgctgtagctgacatgtgaggtgaagctgcag |
87 |
Q |
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| T |
36990900 |
gttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgaggtgaagttgcag |
36990837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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