View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7173_low_16 (Length: 239)
Name: NF7173_low_16
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28695620 - 28695387
Alignment:
| Q |
1 |
acagattgcttagtac---aacctgaggatgttagtgatgaagactattttgctctttgccaaacaacaaagagttcatgtctcaacagattgtttggtt |
97 |
Q |
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| T |
28695620 |
acagattgcttagtactacaacctgaggattttagtgatgaagactattttgctctttgccaaacaacaaagagtttatgtctcaacagattatttggtt |
28695521 |
T |
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| Q |
98 |
gttagtacaactcaagtgttacattagttaagatgatagataccaattcagtataatggcagaaaatattggtagaaaatagtaacaaaacactgttata |
197 |
Q |
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| T |
28695520 |
gttagtacaacttaagtgttacattagttaagatgatagataccaattcagtataatggcagaaaatattggtagaaaatagtaataaaacactgttata |
28695421 |
T |
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| Q |
198 |
ttgatatcaaccaacatcaaagtgattctgatga |
231 |
Q |
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| T |
28695420 |
tcgatatcaaccaacatcaaagtgattctgatga |
28695387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 28695769 - 28695844
Alignment:
| Q |
156 |
gcagaaaatattggtagaaaatagtaacaaaacactgttatattgatatcaaccaacatcaaagtgattctgatga |
231 |
Q |
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|||| ||||| |||||||||| ||||| ||||||||||| |||||||||||| ||| |||| |||| ||||||||| |
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| T |
28695769 |
gcaggaaatagtggtagaaaagagtaataaaacactgttttattgatatcaagcaaaatcagagtgtttctgatga |
28695844 |
T |
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