View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7173_low_19 (Length: 221)

Name: NF7173_low_19
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7173_low_19
NF7173_low_19
[»] chr1 (4 HSPs)
chr1 (14-221)||(35051632-35051839)
chr1 (14-215)||(36526258-36526459)
chr1 (35-186)||(8237247-8237395)
chr1 (128-216)||(37923595-37923683)
[»] chr2 (6 HSPs)
chr2 (14-221)||(19920702-19920909)
chr2 (14-135)||(24588614-24588735)
chr2 (14-152)||(8295013-8295151)
chr2 (14-159)||(9227250-9227396)
chr2 (15-166)||(13922912-13923064)
chr2 (128-209)||(37490918-37490999)
[»] chr8 (1 HSPs)
chr8 (14-213)||(41652606-41652807)
[»] chr5 (3 HSPs)
chr5 (15-208)||(26917294-26917487)
chr5 (14-167)||(39007278-39007431)
chr5 (128-216)||(23270078-23270166)
[»] chr4 (1 HSPs)
chr4 (14-134)||(43381799-43381919)
[»] chr3 (1 HSPs)
chr3 (16-84)||(35529135-35529203)
[»] chr7 (2 HSPs)
chr7 (12-211)||(5460808-5461014)
chr7 (34-160)||(33026712-33026838)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 35051839 - 35051632
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||    
T  35051839 gtgtctatcaaacttgattacaagcaagtggttgacaacataactaggagactcaacaccaatttcaagtttgacgcaattattgatatttgaaaaactt 35051740  T
Q  114 cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttc 213  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35051739 cagttagaacctaccaaaactttaagaaaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacgtcattattttatgctagttc 35051640  T
Q  214 ccacattc 221  Q
    ||||||||    
T  35051639 ccacattc 35051632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 36526459 - 36526258
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    ||||||||||||||||||| ||||||||||||||||  |||  |||| |   ||| || ||||| |||||||||||| ||| |  ||| ||  |||||||    
T  36526459 gtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaaactt 36526360  T
Q  114 cagtta-gaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagtt 212  Q
    || ||| ||| | | ||||||||||||| |||||||||||| ||||||  ||||||| ||| ||| ||||||||   | | ||||||| |||||||||||    
T  36526359 cacttatgaatc-atcaaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttagctcgggcgtcattatcttatgctagtt 36526261  T
Q  213 ccc 215  Q
    |||    
T  36526260 ccc 36526258  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 186
Target Start/End: Original strand, 8237247 - 8237395
Alignment:
Q  35 aagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaacttcagttagaacctaccaaaact 134  Q
    |||||||||||| |||  ||| ||||||||| ||| | ||||||  ||||||| || ||| || | ||||  ||||||||| ||||||  |||||||| |    
T  8237247 aagcaagtggttcacacaatatctaggagacccaataccaattttgtgtttggagctatttttca-attttgaaaacttcacttagaatttaccaaaatt 8237345  T
Q  135 ttaagacaagtttcattagaagacaagaaaataatattggccatttgttagc 186  Q
    |||||| ||||||||||||  |||||| ||||||||||| | | ||||||||    
T  8237346 ttaagataagtttcattag--gacaagcaaataatattgccgacttgttagc 8237395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 37923683 - 37923595
Alignment:
Q  128 caaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttccca 216  Q
    ||||||||||||| |||||||||||| ||||||  ||||||| ||| ||| |||||||  | | | ||||||| |||||||||||||||    
T  37923683 caaaactttaagataagtttcattaggagacaaacaaataatgttgcccacttgttagttagggcgtcattatcttatgctagttccca 37923595  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 19920702 - 19920909
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    |||||||| |||||||||| ||||||| ||||| || |||||||||| |||||||||||||||| || ||| || || || | ||||||||  ||||| |    
T  19920702 gtgtctattgaacttgattgcaagcaaatggttcactacataactagaagactcaacatcaattccacgttcggtgctatcaatgatatttgcaaaacat 19920801  T
Q  114 cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttc 213  Q
    || |||||| ||| ||||||||||||  | |||||||||| | ||||| ||||| | || ||||||||||||||| ||| ||||||| |||| | |||||    
T  19920802 cacttagaatctatcaaaactttaagctaggtttcattaggaaacaagcaaatagtgtttgccatttgttagcaaggacgtcattatcttataccagttc 19920901  T
Q  214 ccacattc 221  Q
    ||||||||    
T  19920902 ccacattc 19920909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 24588735 - 24588614
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||| ||| |||||||||  ||| |||    
T  24588735 gtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattcttgatatttgtaaagctt 24588636  T
Q  114 cagttagaacctaccaaaactt 135  Q
    || |||||| ||| ||||||||    
T  24588635 cacttagaatctaacaaaactt 24588614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 8295013 - 8295151
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    ||||||||||||||||||| |||||||||| || ||  |||| || || |||||||||||||||||||||||||||   || |||||||||  ||| |||    
T  8295013 gtgtctatcgaacttgattgcaagcaagtgatttacggcatagcttggggactcaacatcaatttcatgtttggcgttgttcttgatatttgcaaagctt 8295112  T
Q  114 cagttagaacctaccaaaactttaagacaagtttcatta 152  Q
    || |||||| || |||||||||||||| |||||| ||||    
T  8295113 cacttagaatctgccaaaactttaagataagttttatta 8295151  T

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Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 9227396 - 9227250
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaa--gtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaac 111  Q
    ||||||||||||||||||| |||||||  ||| | ||   || |||||| |||||||| | |||||||||||||| ||| ||||||| |||||  |||||    
T  9227396 gtgtctatcgaacttgattgcaagcaaatgtgctggaaggcacaactagaagactcaata-caatttcatgtttgacgctattattgctatttgtaaaac 9227298  T
Q  112 ttcagttagaacctaccaaaactttaagacaagtttcattagaagaca 159  Q
    |||| |||||| ||| ||||||||||||| |||||||||  |||||||    
T  9227297 ttcatttagaatctatcaaaactttaagataagtttcataggaagaca 9227250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 13922912 - 13923064
Alignment:
Q  15 tgtctatcgaacttgattacaagcaagtggttga-caacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    |||||||||||||||||| |||| |||||||||| | ||||  |||||||||||||||  || |  |||||| |||   || || ||||||  ||| |||    
T  13922912 tgtctatcgaacttgatttcaagtaagtggttgaaccacattcctaggagactcaacactaactcgatgttttgcgttgttctttatatttgtaaagctt 13923011  T
Q  114 cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaat 166  Q
    || |||||| ||||||||||||||||| |||||||||||| | ||||| ||||    
T  13923012 cacttagaatctaccaaaactttaagataagtttcattaggaaacaagcaaat 13923064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 209
Target Start/End: Original strand, 37490918 - 37490999
Alignment:
Q  128 caaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgcta 209  Q
    ||||||||| ||| |||||||||||||||||||| ||||||| ||| ||| |||||||| | ||| ||||||| | ||||||    
T  37490918 caaaactttcagataagtttcattagaagacaagtaaataatgttgtccacttgttagctaggacgtcattatctcatgcta 37490999  T

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Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 41652606 - 41652807
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    |||| |||||||||||||| |||| | |||||||||  | ||||||||||||||||||  | ||  ||||||||||| |||||||||||||  |||||||    
T  41652606 gtgtttatcgaacttgattgcaagtatgtggttgacggcttaactaggagactcaacactagttcaatgtttggcgctattattgatatttgcaaaactt 41652705  T
Q  114 cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaa--ataatattggccatttgttagcaatgacatcattattttatgctagt 211  Q
    || |||||||||||||||||||||||| || ||||||| | | ||||| ||  ||| ||||| ||||||| |||||| ||||| ||||| || | |||||    
T  41652706 cacttagaacctaccaaaactttaagataaatttcattcggaaacaagcaattatagtattgtccatttgctagcaaggacataattatcttgtactagt 41652805  T
Q  212 tc 213  Q
    ||    
T  41652806 tc 41652807  T

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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 26917294 - 26917487
Alignment:
Q  15 tgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaacttc 114  Q
    |||||||||||||||||| ||||||||||||||||  |||| ||||| ||||||||| |||||  ||||||| ||| ||| |||||||||  ||| ||||    
T  26917294 tgtctatcgaacttgattgcaagcaagtggttgacggcatagctaggggactcaacaacaattcaatgtttgacgctattcttgatatttgcaaagcttc 26917393  T
Q  115 agttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgct 208  Q
    | |||||| |||| |||||||||||| |||||| ||||| ||||||| ||||| | ||| |||| |  |||||| | | ||||||| |||||||    
T  26917394 acttagaatctacaaaaactttaagataagttttattaggagacaagcaaatagtgttgcccatctactagcaagggcgtcattatcttatgct 26917487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 39007431 - 39007278
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    ||||||||| |  ||||||  |||||||||||| || | ||| ||||||||||  |||  ||||||||||||||| | ||| |||||||||  | | |||    
T  39007431 gtgtctatcaactttgattgtaagcaagtggttaacgatatagctaggagacttgacacaaatttcatgtttggccctattcttgatatttgtagagctt 39007332  T
Q  114 cagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaata 167  Q
    || |||||| ||||| ||| |||||| ||||||| ||||||| |||||||||||    
T  39007331 cacttagaatctacctaaattttaagccaagttttattagaaaacaagaaaata 39007278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 23270078 - 23270166
Alignment:
Q  128 caaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattattttatgctagttccca 216  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||  || |||||||| | |   ||||||| |||||||||||||||    
T  23270078 caaaactttaagataagtttcattagaagacaagcaaataatgttgctcacttgttagctagggagtcattatcttatgctagttccca 23270166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 43381799 - 43381919
Alignment:
Q  14 gtgtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaactt 113  Q
    ||||||||||||||||||| ||||||||||||||||   |||| || ||||||||||| ||||| |||||||| ||| ||||||||||||| || |||||    
T  43381799 gtgtctatcgaacttgattgcaagcaagtggttgacggtataattaagagactcaacaccaattccatgtttgacgctattattgatatttgaacaactt 43381898  T
Q  114 cagttagaacctaccaaaact 134  Q
    || ||| |||||| |||||||    
T  43381899 cacttaaaacctatcaaaact 43381919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 35529203 - 35529135
Alignment:
Q  16 gtctatcgaacttgattacaagcaagtggttgacaacataactaggagactcaacatcaatttcatgtt 84  Q
    |||||| |||||||||||||||||||||||| || ||||  |||||||||||||||  |||||||||||    
T  35529203 gtctattgaacttgattacaagcaagtggttcacgacatcgctaggagactcaacactaatttcatgtt 35529135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 5460808 - 5461014
Alignment:
Q  12 atgtgtctatcgaacttgattacaagcaagtggttgaca-------acataactaggagactcaacatcaatttcatgtttggcgcaattattgatattt 104  Q
    ||||||||||| || |||||| |||||||||||||||||       ||||   ||||| |||||||| ||||| |||||| ||||| ||| | || | ||    
T  5460808 atgtgtctatcaaaattgattgcaagcaagtggttgacacctaacaacatcgttaggaaactcaacaccaattccatgttcggcgctattctagagactt 5460907  T
Q  105 aaaaaacttcagttagaacctaccaaaactttaagacaagtttcattagaagacaagaaaataatattggccatttgttagcaatgacatcattatttta 204  Q
      ||| ||||  | ||||  |||||||||||||||| |||||||||||| ||||||| ||||| | |||   | |||||||| |  |||||||||| |||    
T  5460908 gcaaagcttccttgagaatttaccaaaactttaagataagtttcattaggagacaagcaaatattgttgctgacttgttagctagaacatcattatctta 5461007  T
Q  205 tgctagt 211  Q
    |||||||    
T  5461008 tgctagt 5461014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 160
Target Start/End: Complemental strand, 33026838 - 33026712
Alignment:
Q  34 caagcaagtggttgacaacataactaggagactcaacatcaatttcatgtttggcgcaattattgatatttaaaaaacttcagttagaacctaccaaaac 133  Q
    |||||||||| |||||| || |  |||| ||||||||| ||||| |||||||||| | ||| |||||||  | ||| ||||| ||||||  |||||||||    
T  33026838 caagcaagtgattgacaccacagataggggactcaacaccaattccatgtttggcactattcttgatatccacaaagcttcacttagaatataccaaaac 33026739  T
Q  134 tttaagacaagtttcattagaagacaa 160  Q
    ||||| | |||||  ||||| ||||||    
T  33026738 tttaaaataagttatattaggagacaa 33026712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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