View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7173_low_2 (Length: 702)
Name: NF7173_low_2
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 116 - 662
Target Start/End: Original strand, 29659988 - 29660534
Alignment:
| Q |
116 |
ttattcaagcacacaagaccctcctcattccaatagttctcacctaacagcttcacatgtatggtatatttctctataaaatattaatactatcatcatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29659988 |
ttattcaagcacacaagaccctcctcattccaatagctctcacctaacagctttacatgtatggtatatttctctataaaatattaatactatcatcatg |
29660087 |
T |
|
| Q |
216 |
caaacaatagtaagcaacaaaatgagtcacaatgagaaaacaagcttttcatggagacaaaattctaatagaaaatcggctagaaatcgacatgttagga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660088 |
caaacaatagtaagcaacaaaatgagtcacaatgagaaaacaagcttttcatggagacaaaattctaatagaaaatcggctagaaatcgacatgttagga |
29660187 |
T |
|
| Q |
316 |
gctgtacgttcaggattccttggcaatcggaattctctcccattgaacttgtcaaggatcttgcagaaagagtgacaaatgctttacgcttggtctctcg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660188 |
gctgtacgttcaggattccttggcaatcggaattctctcccattgaacttgtcaaggatcttgcagaaagagtgacaaatgctttacgcttggtctctcg |
29660287 |
T |
|
| Q |
416 |
gaggagatctttaaaccgagactcatcttccttaggaagatcagcatcggcagggtcatctgctgcttctcataggacggctgctgttgaggattgcatt |
515 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660288 |
gaggagatctttaaaccgagactcgtcttccttaggaagatcagcatcagcagggtcatctgctgcttctcataggacggctgctgttgaggattgcatt |
29660387 |
T |
|
| Q |
516 |
gaattcatccactcttctttttctagatcgaattcctcaaccaaaacatcccacgaagattctatagaagctgcttgagatacttatgatcacagaataa |
615 |
Q |
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| T |
29660388 |
gaattcatccactcttctttttctagatcgaattcctcaaccaaaacatcccacgaagattctatagaagctgcttgagatacttatgatcacagaataa |
29660487 |
T |
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| Q |
616 |
acgacaaaggtgtctgtttattgtatataaacagaattagtttatac |
662 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29660488 |
acgacaaaggtgtctgcttattgtatataaacagaattagtttatac |
29660534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 29659842 - 29659957
Alignment:
| Q |
1 |
ctacttttttacttcttaaatatgtatatgcttcttttctcatcaccttaatccacttttgtgcttgttctttcacacaggtttttcatgataaccattc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29659842 |
ctacttttttacttcttaaatatatatatgcttcttttctgaccaccttaatccacttttgtgcttgttctttcacacaggtttttcatgacaaccattc |
29659941 |
T |
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| Q |
101 |
tcaaatgaaaaatagt |
116 |
Q |
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|||||||||||||||| |
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| T |
29659942 |
tcaaatgaaaaatagt |
29659957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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