View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7173_low_6 (Length: 464)
Name: NF7173_low_6
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 16 - 457
Target Start/End: Original strand, 49041309 - 49041750
Alignment:
| Q |
16 |
tcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttcacacctgaacctttcagcaacttccttctaaccaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041309 |
tcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttcacacctgaacctttcagcaacttccttctaaccaaa |
49041408 |
T |
|
| Q |
116 |
gaaacaaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaacgttgttatgtttgttttcaaagcatctcctgcaacagccattaattctc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041409 |
gaaacaaaaaacatcaactgttcagaaaatggcaaaaccaatggacccaacgttgttatgtttgttttcaaagcatctcctgcaacagccattaattctc |
49041508 |
T |
|
| Q |
216 |
tagccaatgaaacaccaactttccctgtctcatcttctttctggtaaacacagttatagttcttgtcatcagctcctttatgggttcgaactgtatgaac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041509 |
tagccaatgaaacaccaactttccctgtctcatcttctttctggtaaacacagttatagttcttgtcatcagctcctttatgggttcgaactgtatgaac |
49041608 |
T |
|
| Q |
316 |
aagcttgtatttggaacgggttcgatcagaggacttattggaaagaagtatggcggcgccacccattcggaaaatgcaattagaaagaagcattgaacga |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49041609 |
aagcttgtatttggaacgggttcgatcagaggacttattggaaagaagtatggcggcgccacccattcggaaaatgcaattagaaagaagcattgaacga |
49041708 |
T |
|
| Q |
416 |
tcatttccaaagtaccaattgagggttaaattctctgtgctc |
457 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49041709 |
tcatttccaaagtaccaattgagggttaaattctcggtgctc |
49041750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 31333901 - 31333842
Alignment:
| Q |
16 |
tcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
75 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||| |||||||| || |||||||| |
|
|
| T |
31333901 |
tcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatcaggaatataagg |
31333842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 396
Target Start/End: Complemental strand, 49039901 - 49039743
Alignment:
| Q |
238 |
ccctgtctcatcttctttctggtaaacacagttatagttcttgtcatcagctcctttatgggttcgaactgtatgaacaagcttgtatttggaacgggtt |
337 |
Q |
| |
|
|||||| || || ||||| ||| | ||||| || ||| ||||||||| |||||| ||| |||||||| |||||| | |||||| ||||| |||| |
|
|
| T |
49039901 |
ccctgtttcgtcctctttttggaacacacaattgtagctcttgtcattggctcctgaatgagttcgaacgctatgaagtaacttgtacttggattgggtc |
49039802 |
T |
|
| Q |
338 |
cgatcagaggacttattggaaagaagtatggcggcgccacccattcggaaaatgcaatt |
396 |
Q |
| |
|
| |||| |||| |||||||| ||||||| ||| || || |||||||||||||| ||||| |
|
|
| T |
49039801 |
ctatcaaaggatttattggagagaagtacggcagctcctcccattcggaaaatacaatt |
49039743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 23499287 - 23499346
Alignment:
| Q |
16 |
tcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataagg |
75 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||||||| ||||||||||| |||||||| |
|
|
| T |
23499287 |
tcttccaccggcatgaatgcagaaatgttcgaaagctagcttgaaatctggaatataagg |
23499346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 15239495 - 15239448
Alignment:
| Q |
16 |
tcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
63 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
15239495 |
tcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
15239448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 34053194 - 34053147
Alignment:
| Q |
16 |
tcttccaccagcatgaatacagaaatgttcaaaagctaatttgaaatc |
63 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
34053194 |
tcttccaccagcatgaatacaaaaatgctcaaaagctaatttaaaatc |
34053147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 50087325 - 50087384
Alignment:
| Q |
20 |
ccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttc |
79 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
50087325 |
ccaccagcatgtatacaaaaatgttcaaaagcttgtttaaaatcaggtatatatggtttc |
50087384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 23271585 - 23271646
Alignment:
| Q |
19 |
tccaccagcatgaatacagaaatgttcaaaagctaatttgaaatctggtatataaggtttca |
80 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||| ||||||||| || |||||||| |||| |
|
|
| T |
23271585 |
tccaccagcatgaatacaaaaatgctcaaacgcttgtttgaaatcaggaatataaggcttca |
23271646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University