View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7173_low_7 (Length: 416)
Name: NF7173_low_7
Description: NF7173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7173_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 400
Target Start/End: Complemental strand, 40817056 - 40816668
Alignment:
| Q |
12 |
ttattggaaattccgagaacacggaagcaacaacgagtcaatgctccataaccataagaaaaagagagacaccacatctccttcctaaactttgatatat |
111 |
Q |
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| T |
40817056 |
ttattggaaattccgagaacacggaagcaataacgagtcaatgctccacaaccataagaaaaagagagacaacacatctccttcctaaactttgatatat |
40816957 |
T |
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| Q |
112 |
taggaatgttgaaatatgaagaaatatatttatcgatagatgatttagttattataaattccatttaaaatatttgtacgaggttctatattggagtagt |
211 |
Q |
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| T |
40816956 |
taggaatgttgaaatgtgaagaaatatatttattgatagatgatttatttactataaatttcatttaaaatatttgtacgaggttctatgttggagtagt |
40816857 |
T |
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| Q |
212 |
gtttattaaatactattaatnnnnnnnnttataaatgaataatgtgttcatgtaaaactcacttctgtattaaaaaatgaaattctccattgttaatgat |
311 |
Q |
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| T |
40816856 |
gtttattaaatactactaataaaaaaaattataaatgaataatgtgttgatgtaaaacttacttctgtattaaaaaatgaaattctccattgttaatgat |
40816757 |
T |
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| Q |
312 |
ctaaggagcggcctaatataatatatttattgttttatgtataatatacttacctatgagcatttatctttgttaaaaaaggagcaata |
400 |
Q |
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| T |
40816756 |
ctaaggagcggcctaatataatatatttattgttttatgtataatatacttacctatgagcatttatctttgttaaaaaaggagcaata |
40816668 |
T |
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