View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_high_11 (Length: 262)
Name: NF7174_high_11
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 4316268 - 4316502
Alignment:
| Q |
22 |
atggacaagaacgggcaacgtacctcgccgaatttggatccacaagcctcccgattcccacaaaagacccaagtatcacaaagacaaggtccatctttcc |
121 |
Q |
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| T |
4316268 |
atggacaggaacgggcaaagtacctcgccgaatttggatccacaagcctcccgattcccacaaaagacccatgtatcacaaagacaaggtccatctttcc |
4316367 |
T |
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| Q |
122 |
cagtacacatagatttacaagaattacaacattcttcagaagtattaaacttaaactcagaaccccatttcacagctgaaccccaaagctccaaattttc |
221 |
Q |
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| T |
4316368 |
cagtacacatagatttacaagaattacaacattcttcagaagtattaaacttaaactcggaaccccatttcacagctgaaccccaaagctccaaattttc |
4316467 |
T |
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| Q |
222 |
aatccctctacaacaccctccaacattcttctcac |
256 |
Q |
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| T |
4316468 |
aatccctctacaacaccctccaacattcttctcac |
4316502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 30971360 - 30971447
Alignment:
| Q |
146 |
tacaacattcttcagaagtattaaacttaaactcagaaccccatttcacagctgaaccccaaagctccaaattttcaatccctctaca |
233 |
Q |
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| T |
30971360 |
tacaacattcctcagaagaattaaccttaaaatcatcaccccatttcacagcatcaccccatagttccaaatgctcaacccctctaca |
30971447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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