View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_high_3 (Length: 428)
Name: NF7174_high_3
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 9146802 - 9146407
Alignment:
| Q |
20 |
aacatctccataatcttccttcttgtacttccatccaacaaaacactaattaatgtccattcaaatattcattcattactcagagattgtttcccctcaa |
119 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||| |
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| T |
9146802 |
aacatctccagaatcttccttcttgtacttccgtccaacaaaacactgattaatgtccattccaatattcattcattactcacagactgtttcctctcaa |
9146703 |
T |
|
| Q |
120 |
ttatttcatagattttcaattatttcacagactggttcctcaaaattcattaattttccttgttcattcatagactgtttcccctcaattatttcacaga |
219 |
Q |
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|||||||| ||||||||||||||||||||||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9146702 |
ttatttcacagattttcaattatttcacagactgcttcttctcaattcattcattttccttgttcattcatagactgtttcccctcaattatttcacaga |
9146603 |
T |
|
| Q |
220 |
ttttcaatctgatatatnnnnnnnctaatggttgattttgttgtgcccattcaaaatcgttgaacctctctgtctctcaccttcgatttctttttagtaa |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9146602 |
ttttcaatctgatatataaaaaaactaatggttgattttgttgtgcccattcaaaatcgttgaacctctctgtctctcaccttcgatttctttttagtaa |
9146503 |
T |
|
| Q |
320 |
aaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattagggatttaaagctctttgtctctcacctctattccttcatctc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||| |
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| T |
9146502 |
aaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattagggattt-aatctctttgtatctcacctctattccttcatctc |
9146407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 20 - 416
Target Start/End: Complemental strand, 37916141 - 37915751
Alignment:
| Q |
20 |
aacatctccataatcttccttcttgtacttccatccaacaaaacactaattaatgtccattcaaatattcattcattactcagagattgtttcccctcaa |
119 |
Q |
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|
|||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||| || ||||||||||||||||||| ||| | ||||| ||||| |
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| T |
37916141 |
aacatctccagaatcttccttcttatacttccgtccaacagaacactaattaat------tccaatattcattcattactcacagactatttcctctcaa |
37916048 |
T |
|
| Q |
120 |
ttatttcatagattttcaattatttcacagactggttcctcaaaattcattaattttccttgttcattcatagactgtttcccctcaattatttcacaga |
219 |
Q |
| |
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|||||||| |||| |||||||||||||||||||| |||||| |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
37916047 |
ttatttcacagatcttcaattatttcacagactgcttcctctcaattcattcattttccttgttcatttatagactgtttcccatcaattatttcacaga |
37915948 |
T |
|
| Q |
220 |
ttttcaatctgatatatnnnnnnnctaatggttgattttgttgtgcccattcaaaatcgttgaacctctctgtctctcaccttcgatttctttttagtaa |
319 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
37915947 |
ttttcaatctgatatataaaaaaactaatggttgattttgttgtgcgcattcaaaattgatgaacctctctgtctctcaccttcgatttctttttagtaa |
37915848 |
T |
|
| Q |
320 |
aaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattagggatttaaagctctttgtctctcacctctattccttcatctc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |
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| T |
37915847 |
aaagctctctttgatttcttttttagtgttcgtagaactcagattcaagaattagggatttaaagttctttatctctcgcctctattccttcatctc |
37915751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 51703242 - 51703188
Alignment:
| Q |
24 |
tctccataatcttccttct-tgtacttccatccaacaaaacactaattaatgtcc |
77 |
Q |
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|||||| |||||||||||| ||| ||| ||||||||||||||||| ||||||||| |
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| T |
51703242 |
tctccagaatcttccttctctgtgctttcatccaacaaaacactagttaatgtcc |
51703188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 32394476 - 32394530
Alignment:
| Q |
24 |
tctccataatcttccttct-tgtacttccatccaacaaaacactaattaatgtcc |
77 |
Q |
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|||||| |||||||||||| ||| ||| |||||||||||||||| |||||||||| |
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| T |
32394476 |
tctccagaatcttccttctctgtgctttcatccaacaaaacactgattaatgtcc |
32394530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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