View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_low_1 (Length: 743)
Name: NF7174_low_1
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 38325751 - 38325284
Alignment:
| Q |
18 |
aatatgctcagctcaattgaaagaactcattgatgatcgccacagcttagcgcccaaatgcagaaatcagcacacgcaaagattttttatttatttatga |
117 |
Q |
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| T |
38325751 |
aatatgctcagctcaattgaaagaactcattgatgatcgccacagcttagcgcccaaatgcagaaatcagcacacgcaaagattttttatttatttatga |
38325652 |
T |
|
| Q |
118 |
atgctcattgttcggacagcagggcagcattttcccgtttgctttgagcactgattacattcctgacgaatataaataaaacttttaaacaggtatacgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38325651 |
atgctcattgttcggacagcagggcagcattttcccgtttgctttgagcactgattacattcctgacgaatataaatacaacttttaaacaggtatacgc |
38325552 |
T |
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| Q |
218 |
caaagaaaaatcgttttgaaattgaatcaaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataac |
317 |
Q |
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| T |
38325551 |
caaagaaaaatcattttgaaattgaatcaaagggattacatgccaaaaaattgaatacagtttaacctagtgaattcaaacataattgtatgaaaataac |
38325452 |
T |
|
| Q |
318 |
ttggatagaaataaaactcaatcacataggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatttgtatttgttttagtca |
417 |
Q |
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|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38325451 |
ttcgattgaaataaaactcaatcacataggaagagagcaacagaggatactatagctacttattcattgaattttcttaaatctgtatttgttttagtca |
38325352 |
T |
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| Q |
418 |
ttgattactttgaagtatattgtattggttaccgtcattgttcttaaacctagccaattagaatttgc |
485 |
Q |
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| T |
38325351 |
ttgattactttgaagtatattgtattggttacagtcattgttcttaaacctagccaattagaatttgc |
38325284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 484 - 734
Target Start/End: Complemental strand, 38324542 - 38324292
Alignment:
| Q |
484 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattnnnnnnnnggcagcaaagaaacttacattgatacagaagaagtgt |
583 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38324542 |
gccaccaaaaatgaaaatgcttgactgaaatagcaaaaaacaccgtttttcaattaaaaaaaaggcagcaaagaaacttacattgatacagaagaagtgt |
38324443 |
T |
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| Q |
584 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttcttaacacttgtaacaccgatattttaaact |
683 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
38324442 |
gtgattaatctgatgcctgcaaagtttccctctctcagaggggagccaaggctgcatttgagtgcacttatttacacttgtaacaccgatattttaaact |
38324343 |
T |
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| Q |
684 |
gaaggcgtgtccaacaatgttgggcactcaaaattcgtgtttgatgtccat |
734 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38324342 |
gaaggtgtgtccaacaatgttgggcactcaaaattcgtgtttggtgtccat |
38324292 |
T |
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