View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7174_low_10 (Length: 305)

Name: NF7174_low_10
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7174_low_10
NF7174_low_10
[»] chr4 (13 HSPs)
chr4 (43-152)||(6407999-6408108)
chr4 (173-299)||(6408147-6408273)
chr4 (3-117)||(24857879-24858002)
chr4 (68-144)||(22746622-22746698)
chr4 (45-131)||(12753702-12753788)
chr4 (45-145)||(2928844-2928944)
chr4 (80-145)||(52311239-52311304)
chr4 (79-144)||(13994836-13994901)
chr4 (77-144)||(14000139-14000205)
chr4 (87-152)||(20276015-20276080)
chr4 (47-125)||(8563740-8563818)
chr4 (263-295)||(2928771-2928803)
chr4 (80-144)||(26997296-26997360)
[»] chr3 (6 HSPs)
chr3 (43-131)||(10937345-10937433)
chr3 (45-152)||(12988121-12988228)
chr3 (47-152)||(12990999-12991104)
chr3 (78-144)||(44126738-44126805)
chr3 (77-144)||(13921665-13921732)
chr3 (263-295)||(7873796-7873828)
[»] chr1 (12 HSPs)
chr1 (3-131)||(27317617-27317754)
chr1 (43-131)||(36686718-36686806)
chr1 (45-131)||(3850417-3850503)
chr1 (1-131)||(145396-145535)
chr1 (73-131)||(15552958-15553016)
chr1 (78-145)||(29547851-29547920)
chr1 (78-148)||(14762231-14762302)
chr1 (78-117)||(29530196-29530235)
chr1 (79-144)||(26023514-26023579)
chr1 (77-113)||(11441703-11441739)
chr1 (266-294)||(29547955-29547983)
chr1 (88-144)||(40274388-40274444)
[»] chr7 (11 HSPs)
chr7 (83-151)||(37479549-37479617)
chr7 (47-132)||(19203712-19203797)
chr7 (82-152)||(14719297-14719367)
chr7 (73-131)||(20125306-20125364)
chr7 (45-131)||(42937544-42937630)
chr7 (45-131)||(42939844-42939930)
chr7 (85-144)||(26617769-26617828)
chr7 (77-142)||(34226038-34226104)
chr7 (77-142)||(34230166-34230232)
chr7 (45-131)||(34326375-34326461)
chr7 (120-152)||(26451538-26451570)
[»] chr8 (9 HSPs)
chr8 (45-140)||(36911960-36912055)
chr8 (45-131)||(12642460-12642546)
chr8 (45-131)||(23429646-23429732)
chr8 (53-144)||(15007118-15007208)
chr8 (79-144)||(10734067-10734132)
chr8 (87-144)||(10739111-10739168)
chr8 (81-144)||(17909890-17909954)
chr8 (263-294)||(36911894-36911925)
chr8 (78-116)||(29185574-29185612)
[»] chr2 (4 HSPs)
chr2 (55-130)||(17319041-17319116)
chr2 (78-148)||(19912376-19912447)
chr2 (45-117)||(18557564-18557636)
chr2 (47-115)||(26195393-26195461)
[»] chr5 (12 HSPs)
chr5 (52-131)||(18079977-18080056)
chr5 (82-152)||(17604824-17604894)
chr5 (45-131)||(25590020-25590106)
chr5 (77-146)||(7823100-7823169)
chr5 (78-131)||(31109021-31109074)
chr5 (43-131)||(29742155-29742243)
chr5 (78-117)||(24213326-24213365)
chr5 (80-144)||(19479473-19479537)
chr5 (80-146)||(16633281-16633347)
chr5 (80-131)||(24228304-24228356)
chr5 (263-295)||(25214353-25214385)
chr5 (263-295)||(25278503-25278535)
[»] chr6 (5 HSPs)
chr6 (45-131)||(25398178-25398263)
chr6 (78-131)||(19441161-19441215)
chr6 (85-145)||(23599961-23600022)
chr6 (263-295)||(23599899-23599931)
chr6 (1-45)||(25397927-25397971)
[»] scaffold0248 (1 HSPs)
scaffold0248 (79-144)||(16218-16284)
[»] scaffold0062 (2 HSPs)
scaffold0062 (78-152)||(19931-20006)
scaffold0062 (78-152)||(30099-30174)
[»] scaffold0214 (1 HSPs)
scaffold0214 (78-145)||(29515-29583)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 6407999 - 6408108
Alignment:
Q  43 actaagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataataca 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6407999 actaagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaaagtaaaggcacacttgtgaagagaataataca 6408098  T
Q  143 aaagctttca 152  Q
    ||| ||||||    
T  6408099 aaatctttca 6408108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 173 - 299
Target Start/End: Original strand, 6408147 - 6408273
Alignment:
Q  173 gatcttgtgttttaagtttatttcataacacgtttagatgttgtgaagagaataatacaaaagttttcatcannnnnnnnnnnnnnnnnattgatcttgt 272  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||                 |||||||||||    
T  6408147 gatcttgtgctttaagtttatttcataacacatttagatgttgtaaagagaataatacaaaagttttcatcatcttcttcttcttcttcattgatcttgt 6408246  T
Q  273 gcttttagtttatttcataacaccaaa 299  Q
    |||||||||||||||||||||||||||    
T  6408247 gcttttagtttatttcataacaccaaa 6408273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 24858002 - 24857879
Alignment:
Q  3 attaatggatgtccatcaattaaccttccacatacttgtaact---------aagtggattgtaaagtggttattcatctacctatttgtgtcctataaa 93  Q
    |||| |||||||||||| |||||| ||||||||||||||||||         ||||||||||||| ||| |||||||| |||||||||||||||||||||    
T  24858002 attagtggatgtccatccattaactttccacatacttgtaacttccaccagtaagtggattgtaatgtgcttattcatttacctatttgtgtcctataaa 24857903  T
Q  94 taggacctatattgcaatgtaaag 117  Q
    |||||  |||| ||||||||||||    
T  24857902 taggatttataatgcaatgtaaag 24857879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 22746622 - 22746698
Alignment:
Q  68 tcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    |||| ||||||| |||||||||||||||||||||| ||| |||||||| | ||| ||||||||||||||||||||||    
T  22746622 tcatgtacctatatgtgtcctataaataggacctacattacaatgtaatgacacccttgtgaagagaataatacaaa 22746698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 12753788 - 12753702
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    |||||||||||||| ||| | |||||| ||||||| |||||| ||||||||||||||| ||| |||||||| | |||||||||||||    
T  12753788 taagtggattgtaatgtgatcattcatgtacctatatgtgtcttataaataggacctacattacaatgtaatgacacacttgtgaag 12753702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 145
Target Start/End: Complemental strand, 2928944 - 2928844
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    ||||||| |||||| ||| | |||||| || |||| |||||||||||||||||||||| ||| |||||||| | ||||||||| | |||||||||| |||    
T  2928944 taagtgggttgtaatgtgatcattcatatatctatatgtgtcctataaataggacctacattacaatgtaatgacacacttgtaatgagaataatataaa 2928845  T
Q  145 a 145  Q
    |    
T  2928844 a 2928844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 52311304 - 52311239
Alignment:
Q  80 ttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaa 145  Q
    |||||||||||||||||||   |||||||| ||||||| |||| ||||||||||||||||||||||    
T  52311304 ttgtgtcctataaataggattcatattgcagtgtaaagacacatttgtgaagagaataatacaaaa 52311239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 13994836 - 13994901
Alignment:
Q  79 tttgtgtcctataaataggacctatattgcaatgtaaag-gcacacttgtgaagagaataatacaaa 144  Q
    |||||||| ||||||||||||||||| ||||||||||||  |||||||||||||||||||| |||||    
T  13994836 tttgtgtcttataaataggacctata-tgcaatgtaaagtacacacttgtgaagagaataacacaaa 13994901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 14000139 - 14000205
Alignment:
Q  77 tatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    ||||| |||| |||||||||||||||||| |||||||||   |||||||||||||||||||| |||||    
T  14000139 tatttatgtcttataaataggacctatat-gcaatgtaagtacacacttgtgaagagaataacacaaa 14000205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 20276015 - 20276080
Alignment:
Q  87 ctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaagctttca 152  Q
    |||||||||||||  |||||| | ||||||| ||||| |||||| ||||||||||||| |||||||    
T  20276015 ctataaataggactcatattgtattgtaaagacacacatgtgaacagaataatacaaaggctttca 20276080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 8563818 - 8563740
Alignment:
Q  47 agtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacactt 125  Q
    ||||||||||||  || | |||||| ||  ||| |||||||||||||||| ||||||||| |||||||| | |||||||    
T  8563818 agtggattgtaatatgatcattcatttatatatatgtgtcctataaatagaacctatattacaatgtaatgacacactt 8563740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 2928803 - 2928771
Alignment:
Q  263 ttgatcttgtgcttttagtttatttcataacac 295  Q
    ||||||||||||||||| |||||||||||||||    
T  2928803 ttgatcttgtgcttttattttatttcataacac 2928771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 26997296 - 26997360
Alignment:
Q  80 ttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    |||||| |||||||||||||  |||||  | || |||| || |||||||||||||||||||||||    
T  26997296 ttgtgtactataaataggactcatattatattgcaaagacatacttgtgaagagaataatacaaa 26997360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 10937345 - 10937433
Alignment:
Q  43 actaagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||    
T  10937345 actaagtggactgtaaagtggttattcatctacctatttgtgtcctataaataggatctatattgcaatgtaaagacacatttgagaag 10937433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 12988121 - 12988228
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    ||||||||||||||||||  |||||||  |||||||  |||||||||||||||||||||| | ||||||||| | ||||||||||||||||||||| |||    
T  12988121 taagtggattgtaaagtgcctattcattcacctattgatgtcctataaataggacctataatccaatgtaaatgtacacttgtgaagagaataatagaaa 12988220  T
Q  145 agctttca 152  Q
    ||||||||    
T  12988221 agctttca 12988228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 152
Target Start/End: Original strand, 12990999 - 12991104
Alignment:
Q  47 agtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaag 146  Q
    ||||||||||||||||  |||| ||  |||||||| |||||||||||||||||||||| | ||||||||| | ||||||||||||| ||||||| |||||    
T  12990999 agtggattgtaaagtgcctattgattcacctatttatgtcctataaataggacctataatccaatgtaaatgtacacttgtgaagaaaataatagaaaag 12991098  T
Q  147 ctttca 152  Q
    ||||||    
T  12991099 ctttca 12991104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 144
Target Start/End: Complemental strand, 44126805 - 44126738
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgt-aaaggcacacttgtgaagagaataatacaaa 144  Q
    |||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||||||||||    
T  44126805 atttgtgtcctataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaa 44126738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 13921665 - 13921732
Alignment:
Q  77 tatttgtgtcctataaataggacctatattgcaatgtaaag-gcacacttgtgaagagaataatacaaa 144  Q
    |||||||||| ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |||||    
T  13921665 tatttgtgtcttataaataggacctata-tgcaatgtaaagtatacacttgtgaagagaataacacaaa 13921732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 7873828 - 7873796
Alignment:
Q  263 ttgatcttgtgcttttagtttatttcataacac 295  Q
    |||||||||| ||||||||||||||||||||||    
T  7873828 ttgatcttgtacttttagtttatttcataacac 7873796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 27317617 - 27317754
Alignment:
Q  3 attaatggatgtccatcaattaaccttccacatacttgtaact---------aagtggattgtaaagtggttattcatctacctatttgtgtcctataaa 93  Q
    |||| |||||||||||| ||||||||||||||||| |||||||         ||||||||||||| | | |||||||| |||| ||||||||||||||||    
T  27317617 attagtggatgtccatccattaaccttccacatacatgtaactcccagtagcaagtggattgtaatgcgattattcatttaccaatttgtgtcctataaa 27317716  T
Q  94 taggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    || ||||||||||| ||||||||| |||||||| ||||    
T  27317717 tatgacctatattgaaatgtaaagacacacttgagaag 27317754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 36686718 - 36686806
Alignment:
Q  43 actaagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||| ||| |||| ||||    
T  36686718 actaagtggattgtaaagtggttattcatatacctatttgtgtcctaaaaatatgacatatattgtaatgtaaagacactcttgagaag 36686806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 3850503 - 3850417
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||||| || ||| |||||||| |||||||||||||||||||||||| | |||||||||||| ||||| ||||||| |||||    
T  3850503 taagtggattgaaatgtgattattcatttacctatttgtgtcctataaatagaatctatattgcaatataaagacacacttatgaag 3850417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 145535 - 145396
Alignment:
Q  1 ctattaatggatgtccatcaattaaccttccacatacttgtaact---------aagtggattgtaaagtggttattcatctacctatttgtgtcctata 91  Q
    |||||| |||||||||||| |||| |||||||||| |||||||||         ||||||||||||| ||| | |||||| ||||||| || ||||||||    
T  145535 ctattagtggatgtccatccattacccttccacatgcttgtaactcccactattaagtggattgtaatgtgatcattcatgtacctatatgcgtcctata 145436  T
Q  92 aataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||||| ||| |||||||| | |||||||| ||||    
T  145435 aataggacctacattacaatgtaatgacacacttgagaag 145396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 15552958 - 15553016
Alignment:
Q  73 tacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||    
T  15552958 tacctatatgtatcctataaataggacctatattgcaatgtaatgacacacttgtgaag 15553016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 145
Target Start/End: Original strand, 29547851 - 29547920
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaag-gcacacttg-tgaagagaataatacaaaa 145  Q
    |||| ||||||||||||||||||||||||| |||||||||  ||||||||   |||||||||||||||||    
T  29547851 atttatgtcctataaataggacctatattgtaatgtaaagaacacacttgaaaaagagaataatacaaaa 29547920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 14762302 - 14762231
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaa-ggcacacttgtgaagagaataatacaaaagct 148  Q
    |||||||| ||||||||||||| ||||||||||||||||   |  |||||| |||| |||||||||||||||    
T  14762302 atttgtgttctataaataggacttatattgcaatgtaaataacttacttgtaaagataataatacaaaagct 14762231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 117
Target Start/End: Original strand, 29530196 - 29530235
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaag 117  Q
    ||||||||| |||||||||||||||||||| |||||||||    
T  29530196 atttgtgtcatataaataggacctatattgtaatgtaaag 29530235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 26023514 - 26023579
Alignment:
Q  79 tttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    ||||| |||||||||||| ||||| ||||  |||||||| || || || |||||||||||||||||    
T  26023514 tttgtatcctataaatagaacctacattgtcatgtaaagacatacatgagaagagaataatacaaa 26023579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 11441739 - 11441703
Alignment:
Q  77 tatttgtgtcctataaataggacctatattgcaatgt 113  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  11441739 tatttgtgtcctataaatatgacctatattgtaatgt 11441703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 29547955 - 29547983
Alignment:
Q  266 atcttgtgcttttagtttatttcataaca 294  Q
    |||||||||||||||||||||||||||||    
T  29547955 atcttgtgcttttagtttatttcataaca 29547983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 144
Target Start/End: Complemental strand, 40274444 - 40274388
Alignment:
Q  88 tataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    |||||||||| |  |||||| | || |||| ||||||||||||||||||||||||||    
T  40274444 tataaatagggctaatattgtattgcaaagacacacttgtgaagagaataatacaaa 40274388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 37479617 - 37479549
Alignment:
Q  83 tgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaagctttc 151  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  37479617 tgtcctataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataatacaaaagctttc 37479549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 132
Target Start/End: Complemental strand, 19203797 - 19203712
Alignment:
Q  47 agtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaaga 132  Q
    |||||||||||| ||| |||||||| ||||||||||||||| ||||| |||| ||||||| |||| ||||| ||||||||||||||    
T  19203797 agtggattgtaatgtgattattcatttacctatttgtgtccaataaacaggatctatattacaatataaagacacacttgtgaaga 19203712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 14719367 - 14719297
Alignment:
Q  82 gtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaagctttca 152  Q
    |||||||||||||||| |  |||||| | |||||| |||||||||||||||||||||||||||||||||||    
T  14719367 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaaagctttca 14719297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 20125306 - 20125364
Alignment:
Q  73 tacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||| | |||||||||||||    
T  20125306 tacctatatgtatcctataaataggacatatattgcaatgtaatgacacacttgtgaag 20125364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 42937544 - 42937630
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| |||||| ||| | |||||| ||||||| |||||||||||||||||||| | ||| |||||||| | ||||||| |||||    
T  42937544 taagtgggttgtaatgtgatcattcatgtacctatatgtgtcctataaataggaccaacattacaatgtaatgacacacttttgaag 42937630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 42939844 - 42939930
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| |||||| ||| | ||||||  |||||| ||||||||||||||| |||||| ||| |||||||| | |||||||||||||    
T  42939844 taagtgggttgtaatgtgttcattcatgcacctatatgtgtcctataaataagacctacattacaatgtaatgacacacttgtgaag 42939930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 26617828 - 26617769
Alignment:
Q  85 tcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    ||||||||||||| |  |||||| | ||||||| ||||||||||||||||||||||||||    
T  26617828 tcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaa 26617769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 34226104 - 34226038
Alignment:
Q  77 tatttgtgtcctataaataggacctatattgcaatgtaaa-ggcacacttgtgaagagaataataca 142  Q
    ||||||||||||||||||||||| |||||| |||||||||   |||||||||||  |||||||||||    
T  34226104 tatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataataca 34226038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 34230232 - 34230166
Alignment:
Q  77 tatttgtgtcctataaataggacctatattgcaatgtaaa-ggcacacttgtgaagagaataataca 142  Q
    ||||||||||||||||||||||| |||||| |||||||||   |||||||||||  |||||||||||    
T  34230232 tatttgtgtcctataaataggacttatatttcaatgtaaataacacacttgtgagaagaataataca 34230166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 34326375 - 34326461
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| |||||| ||| | |||||| ||| ||| || |||||||||||| |||||| ||| |||||||||| |||| ||||||||    
T  34326375 taagtgggttgtaatgtgatcattcatatacttatatgcgtcctataaataagacctacattacaatgtaaagacacatttgtgaag 34326461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 26451538 - 26451570
Alignment:
Q  120 acacttgtgaagagaataatacaaaagctttca 152  Q
    |||||||||||||||||||||||||| ||||||    
T  26451538 acacttgtgaagagaataatacaaaaactttca 26451570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 140
Target Start/End: Complemental strand, 36912055 - 36911960
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataata 140  Q
    ||||||| |||||| ||| | |||||| ||||||| ||| |||||||||||||||||| ||| |||||||| | ||||||| ||||||||||||||    
T  36912055 taagtgggttgtaatgtgatcattcatgtacctatatgtatcctataaataggacctacattacaatgtaatgacacacttctgaagagaataata 36911960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 131
Target Start/End: Complemental strand, 12642546 - 12642460
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||||||||||||  |||||||  ||||||||||||||||||||||||||||||| | || |||||| | ||||||| ||||    
T  12642546 taagtggattgtaaagtgcctattcattcacctatttgtgtcctataaataggacctataattcattgtaaatgtacacttgagaag 12642460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 23429646 - 23429732
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| |||||| ||| | |||||| ||||||| |||||||||||||||||||||| ||| |||||||| | |||||||||||||    
T  23429646 taagtgggttgtaatgtgatcattcatgtacctatatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaag 23429732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 15007118 - 15007208
Alignment:
Q  53 ttgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    |||||| ||| | |||||| || |||| |||||||||||||| ||||||| ||| |||||||||| |||||| |||||||| ||||||||||    
T  15007118 ttgtaatgtgatcattcatgtatctatatgtgtcctataaatgggacctacattacaatgtaaagacacactggtgaagag-ataatacaaa 15007208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 10734067 - 10734132
Alignment:
Q  79 tttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    ||||| |||||||||||||||||| ||||  ||||||||  | |||||||||||||||||||||||    
T  10734067 tttgtatcctataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaa 10734132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 10739111 - 10739168
Alignment:
Q  87 ctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    |||||||||||||||| ||||| ||||||||  | |||||||||||||||||||||||    
T  10739111 ctataaataggacctacattgccatgtaaagatatacttgtgaagagaataatacaaa 10739168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 17909890 - 17909954
Alignment:
Q  81 tgtgtcctataaataggacctatattgcaatgtaaag-gcacacttgtgaagagaataatacaaa 144  Q
    ||||||||||||||||||| |||||  ||||||||||  |||||||| |||||||||||||||||    
T  17909890 tgtgtcctataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaa 17909954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 263 - 294
Target Start/End: Complemental strand, 36911925 - 36911894
Alignment:
Q  263 ttgatcttgtgcttttagtttatttcataaca 294  Q
    ||||||||||||||||||||||||||||||||    
T  36911925 ttgatcttgtgcttttagtttatttcataaca 36911894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 29185612 - 29185574
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaa 116  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  29185612 atttgtgtcctataaataggacatatattgtaatgtaaa 29185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 17319116 - 17319041
Alignment:
Q  55 gtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaa 130  Q
    |||| ||| |||||||| |||||| ||||||||||||||||| ||||||| |||||||||||| ||||||||||||    
T  17319116 gtaatgtgcttattcatttacctaattgtgtcctataaatagaacctataatgcaatgtaaagacacacttgtgaa 17319041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 19912376 - 19912447
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaaggc-acacttgtgaagagaataatacaaaagct 148  Q
    |||||||||||||||||||||||||||||  ||||||||    |||||||||||||||||||||||||||||    
T  19912376 atttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaagagaataatacaaaagct 19912447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 18557636 - 18557564
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaag 117  Q
    ||||||||||||||| ||  |||||||  |||||||||||||||||||||| |||||||| || |||||||||    
T  18557636 taagtggattgtaaaatgcgtattcattcacctatttgtgtcctataaatatgacctataatgtaatgtaaag 18557564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 26195393 - 26195461
Alignment:
Q  47 agtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaa 115  Q
    |||||||||||| ||| |  | ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26195393 agtggattgtaatgtgatcttccatttacctatatgtgtcctataaataggacctatattgcaatgtaa 26195461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 18080056 - 18079977
Alignment:
Q  52 attgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| ||| | |||||| ||||||| |||||||||||||||||||||| ||| |||||||| | |||||||||||||    
T  18080056 attgtaatgtgatcattcatgtacctatatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaag 18079977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 17604824 - 17604894
Alignment:
Q  82 gtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaagctttca 152  Q
    |||||||||||||||| |  |||||| | |||||| |||||||||||||||||||||||||||| ||||||    
T  17604824 gtgtcctataaatagggctcatattgtagtgtaaatgcacacttgtgaagagaataatacaaaaactttca 17604894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 25590020 - 25590106
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||||||||||||  ||||| |  |||||||||| || |||||||| |||||||| ||||| ||||||| ||||||||||||    
T  25590020 taagtggattgtaaagtgtctattctttcacctatttgtatcttataaatatgacctataatgcaaagtaaaggtacacttgtgaag 25590106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 7823169 - 7823100
Alignment:
Q  77 tatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaag 146  Q
    ||||||||||||||||||||||| ||| ||   ||||||||  |||||||||||||||||||||||||||    
T  7823169 tatttgtgtcctataaataggacttatgttttgatgtaaagaaacacttgtgaagagaataatacaaaag 7823100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 31109074 - 31109021
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||| ||||||||||| |||||||||||||||| | |||||||||||||    
T  31109074 atttgtgtcatataaataggatctatattgcaatgtaatgacacacttgtgaag 31109021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 29742243 - 29742155
Alignment:
Q  43 actaagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||||| |||||| ||| | |||||| ||| ||| |||||| ||||||||||||||| |||  ||||||| | |||||||||||||    
T  29742243 actaagtgggttgtaatgtgatcattcatgtacttatatgtgtcatataaataggacctacattaaaatgtaatgacacacttgtgaag 29742155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 24213365 - 24213326
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaag 117  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  24213365 atttgtgtcctataaataggacctatattgtaatgtaaag 24213326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 19479537 - 19479473
Alignment:
Q  80 ttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaa 144  Q
    |||||| ||||||||||| | ||||||| | ||||||| ||||||| | ||||||||||||||||    
T  19479537 ttgtgtactataaatagggcttatattgtattgtaaagacacacttataaagagaataatacaaa 19479473  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 146
Target Start/End: Complemental strand, 16633347 - 16633281
Alignment:
Q  80 ttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaagagaataatacaaaag 146  Q
    |||||||||||||||||| |  |||||| | || |||| ||| |||||||||||||||||| |||||    
T  16633347 ttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaag 16633281  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 24228356 - 24228304
Alignment:
Q  80 ttgtgtcctataaataggacctatattgcaatgtaaag-gcacacttgtgaag 131  Q
    |||| |||||||||||||| |||||||| |||||||||  |||||||||||||    
T  24228356 ttgtatcctataaataggatctatattgtaatgtaaagtacacacttgtgaag 24228304  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 25214385 - 25214353
Alignment:
Q  263 ttgatcttgtgcttttagtttatttcataacac 295  Q
    ||||||| |||||||||||||||||||||||||    
T  25214385 ttgatctagtgcttttagtttatttcataacac 25214353  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 25278535 - 25278503
Alignment:
Q  263 ttgatcttgtgcttttagtttatttcataacac 295  Q
    ||||||| |||||||||||||||||||||||||    
T  25278535 ttgatctagtgcttttagtttatttcataacac 25278503  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 25398178 - 25398263
Alignment:
Q  45 taagtggattgtaaagtggttattcatctacctatttgtgtcctataaataggacctatattgcaatgtaaaggcacacttgtgaag 131  Q
    ||||||| |||||| ||| | |||||| ||| ||| |||||||||||||||||||||| ||| |||||||| | |||||||||||||    
T  25398178 taagtgggttgtaatgtgatcattcatgtac-tatatgtgtcctataaataggacctacattacaatgtaatgacacacttgtgaag 25398263  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Complemental strand, 19441215 - 19441161
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaagg-cacacttgtgaag 131  Q
    |||||||||||||||||||||| ||||||| ||| ||| || |||||||||||||    
T  19441215 atttgtgtcctataaataggacatatattgtaatataacggacacacttgtgaag 19441161  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 145
Target Start/End: Complemental strand, 23600022 - 23599961
Alignment:
Q  85 tcctataaataggacctatattgcaatgtaaaggc-acacttgtgaagagaataatacaaaa 145  Q
    |||||||||||||||||| ||| | ||||||||   |||||| |||||||||||||||||||    
T  23600022 tcctataaataggacctacattactatgtaaagtatacacttatgaagagaataatacaaaa 23599961  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 23599931 - 23599899
Alignment:
Q  263 ttgatcttgtgcttttagtttatttcataacac 295  Q
    |||||||||||||||||||||||||| ||||||    
T  23599931 ttgatcttgtgcttttagtttatttcttaacac 23599899  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25397927 - 25397971
Alignment:
Q  1 ctattaatggatgtccatcaattaaccttccacatacttgtaact 45  Q
    |||||| |||||||||||| |||| |||||||||| |||||||||    
T  25397927 ctattagtggatgtccatccattatccttccacatgcttgtaact 25397971  T

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Target: scaffold0248 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 144
Target Start/End: Original strand, 16218 - 16284
Alignment:
Q  79 tttgtgtcctataaataggacctatattgcaatgtaaag-gcacacttgtgaagagaataatacaaa 144  Q
    ||||| |||||||||||||||||| ||||| ||||||||  ||||| |||||||| |||||||||||    
T  16218 tttgtatcctataaataggacctacattgccatgtaaagaacacacctgtgaagaaaataatacaaa 16284  T

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Target: scaffold0062 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 19931 - 20006
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaagg-cacacttgtgaagagaataatacaaaagctttca 152  Q
    ||||||||| |||||||| ||||||||||| ||  | ||   ||||||| ||||||||||||||||||||||||||    
T  19931 atttgtgtcatataaataagacctatattgtaacttgaattacacacttctgaagagaataatacaaaagctttca 20006  T

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Target: scaffold0062; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 30099 - 30174
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaagg-cacacttgtgaagagaataatacaaaagctttca 152  Q
    ||||||||| |||||||| ||||||||||| ||  | ||   ||||||| ||||||||||||||||||||||||||    
T  30099 atttgtgtcatataaataagacctatattgtaacttgaattacacacttctgaagagaataatacaaaagctttca 30174  T

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Target: scaffold0214 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 29583 - 29515
Alignment:
Q  78 atttgtgtcctataaataggacctatattgcaatgtaaag-gcacacttgtgaagagaataatacaaaa 145  Q
    |||||||||||||||||||||| |||||| | ||||||||  ||||||| | |  ||||||||||||||    
T  29583 atttgtgtcctataaataggacttatatttctatgtaaagaacacacttattagaagaataatacaaaa 29515  T

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