View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7174_low_13 (Length: 247)

Name: NF7174_low_13
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7174_low_13
NF7174_low_13
[»] chr2 (4 HSPs)
chr2 (17-246)||(32886473-32886699)
chr2 (98-233)||(26911141-26911276)
chr2 (136-206)||(31637096-31637165)
chr2 (112-176)||(44985556-44985620)
[»] chr8 (3 HSPs)
chr8 (68-228)||(32943505-32943664)
chr8 (71-176)||(3053336-3053440)
chr8 (68-177)||(26457078-26457184)
[»] chr6 (3 HSPs)
chr6 (106-210)||(1350524-1350628)
chr6 (111-174)||(24619368-24619431)
chr6 (111-176)||(8438920-8438985)
[»] chr1 (3 HSPs)
chr1 (107-217)||(44058160-44058267)
chr1 (127-175)||(24214100-24214148)
chr1 (111-176)||(23646761-23646825)
[»] scaffold0287 (1 HSPs)
scaffold0287 (113-206)||(506-599)
[»] chr7 (3 HSPs)
chr7 (113-206)||(3496965-3497058)
chr7 (111-176)||(44397418-44397483)
chr7 (111-178)||(5968385-5968452)
[»] chr5 (5 HSPs)
chr5 (92-177)||(34768911-34768996)
chr5 (98-231)||(2684875-2685005)
chr5 (106-180)||(20164394-20164468)
chr5 (111-159)||(11404677-11404725)
chr5 (68-150)||(14502698-14502779)
[»] chr4 (12 HSPs)
chr4 (112-177)||(53718242-53718307)
chr4 (106-231)||(16461402-16461524)
chr4 (106-233)||(13843088-13843215)
chr4 (111-172)||(9088113-9088174)
chr4 (155-233)||(13869874-13869952)
chr4 (68-173)||(31012560-31012664)
chr4 (111-174)||(5579783-5579846)
chr4 (98-177)||(50116282-50116361)
chr4 (128-174)||(43389649-43389695)
chr4 (99-173)||(17055997-17056071)
chr4 (106-176)||(22227012-22227082)
chr4 (125-174)||(22606970-22607019)
[»] scaffold0019 (1 HSPs)
scaffold0019 (148-233)||(69026-69111)
[»] chr3 (1 HSPs)
chr3 (92-176)||(51818409-51818493)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 32886699 - 32886473
Alignment:
Q  17 gtgctttggggatgtttttcattactaaaatgcgaaatatttgattgggatacaacctcaaatcaaaagtatttgttggatacacacacaaataataaaa 116  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||   || |||||||||||| ||||||    
T  32886699 gtgctttggggatgtttttcattactaaaatacgaaatacttgattgagatacaacctcaaatcaaaagtatttg---gacacacacacaaatgataaaa 32886603  T
Q  117 tttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttatttagatttgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32886602 tttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacttgtatgcgcttaaatgaattttatttagatttgt 32886503  T
Q  217 ggctatgtaagagttgccctactaaaatat 246  Q
    ||||||||||||||||||||||||||||||    
T  32886502 ggctatgtaagagttgccctactaaaatat 32886473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 26911276 - 26911141
Alignment:
Q  98 acacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaat 197  Q
    ||||||| ||||||||||||||||| || ||||| |||||||||  || |||||| ||||||| ||||||||||||| ||||| || | |||| | ||||    
T  26911276 acacacataaataataaaatttaaaagataaataattaagtcacgccatttaataacatttcacttttaaattttattatctatgtatttgtgttcaaat 26911177  T
Q  198 gaattttatttagatttgtggctatgtaagagttgc 233  Q
    |||||| |||||| |||||  || | ||||||||||    
T  26911176 gaatttaatttaggtttgtctctctataagagttgc 26911141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 31637096 - 31637165
Alignment:
Q  136 agtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttat 206  Q
    |||||||||||||||||||||||| ||||||||||||||||| || || |||||||  |||| ||||||||    
T  31637096 agtcacatcacttaatatcatttcttttttaaattttatcat-tatgtatatgtgcccaaataaattttat 31637165  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 176
Target Start/End: Complemental strand, 44985620 - 44985556
Alignment:
Q  112 taaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatca 176  Q
    ||||||||||| || ||||| || |||||||||| ||||||||||||   |||||| ||||||||    
T  44985620 taaaatttaaaagaaaaataatttagtcacatcagttaatatcatttttcttttaatttttatca 44985556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 32943505 - 32943664
Alignment:
Q  68 acaacctcaaatcaaaagtatttgttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatt--tcattttt 165  Q
    |||||| |||||||||||||||||   |  ||||||| |||||||||||||||||||| ||||| |||||||| ||||||||||||| ||  ||| || |    
T  32943505 acaaccacaaatcaaaagtatttggacgc-acacacataaataataaaatttaaatgaaaaataattaagtcatatcacttaatatcgttgatcacttct 32943603  T
Q  166 aaattttatcatctacgtgtatgtgcttaaatgaattttatttagatttgtggctatgtaaga 228  Q
    |||||||||| ||  | ||| ||| | |||||||||||||||||| |||||| ||||||||||    
T  32943604 aaattttatcgtc--catgtgtgtacctaaatgaattttatttaggtttgtgactatgtaaga 32943664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 3053336 - 3053440
Alignment:
Q  71 acctcaaatcaaaagtatttgttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaatt 170  Q
    |||||||||||| |||||||   | ||||||||| |||| |||||||||||| |||||||| || |||||||||||||||||  |||||  |||||||||    
T  3053336 acctcaaatcaagagtatttaa-gcatacacacataaatgataaaatttaaaagagaaataatttagtcacatcacttaataaaatttctcttttaaatt 3053434  T
Q  171 ttatca 176  Q
    ||||||    
T  3053435 ttatca 3053440  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 26457078 - 26457184
Alignment:
Q  68 acaacctcaaatcaaaagtatttgttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaa 167  Q
    |||||| ||||||||||| |||||   || ||| ||| ||||||||||||||||| |||||||| || ||| ||||||||| |||| |||||  ||||||    
T  26457078 acaaccccaaatcaaaagcatttg---gacacatacataaataataaaatttaaaagagaaataatttagttacatcacttgatattatttctcttttaa 26457174  T
Q  168 attttatcat 177  Q
    | ||||||||    
T  26457175 actttatcat 26457184  T

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Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 1350524 - 1350628
Alignment:
Q  106 aaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaatttta 205  Q
    |||| ||||||||||||||||| ||| |||| ||| ||||||||||||| ||||| ||| ||||||||||||||| |||  || ||||||||||||||||    
T  1350524 aaatgataaaatttaaatgagatataattaaatcatatcacttaatatcgtttcactttaaaattttatcatctatgtgagtgcgcttaaatgaatttta 1350623  T
Q  206 tttag 210  Q
    |||||    
T  1350624 tttag 1350628  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 24619368 - 24619431
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttat 174  Q
    |||||||||||| |||||||| || ||| |||||||||||||||||||   |||||||||||||    
T  24619368 ataaaatttaaaagagaaataatttagttacatcacttaatatcatttttcttttaaattttat 24619431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 8438985 - 8438920
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatca 176  Q
    |||||| ||||| |||||||| || | ||||||||||||||||||| ||  |||||||||||||||    
T  8438985 ataaaaattaaaagagaaataatttaatcacatcacttaatatcatctctcttttaaattttatca 8438920  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 217
Target Start/End: Complemental strand, 44058267 - 44058160
Alignment:
Q  107 aataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttat 206  Q
    |||||||||||||||| | |||||| || |||| ||||||| |||||||||||| ||||||||||||||||||| |||||||| |  |||| ||||||||    
T  44058267 aataataaaatttaaaagggaaataatttagtc-catcactaaatatcatttcacttttaaattttatcatctatgtgtatgtcc--aaataaattttat 44058171  T
Q  207 ttagatttgtg 217  Q
    |||| ||||||    
T  44058170 ttaggtttgtg 44058160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 24214100 - 24214148
Alignment:
Q  127 aaatagttaagtcacatcacttaatatcatttcatttttaaattttatc 175  Q
    ||||| || |||||||||||||||||||||||| |||||||||||||||    
T  24214100 aaataatttagtcacatcacttaatatcatttcttttttaaattttatc 24214148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 23646761 - 23646825
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatca 176  Q
    ||||||||||||||| ||||| || |||||| ||||||||||||||||   |||||||||||||||    
T  23646761 ataaaatttaaatgaaaaataatttagtcac-tcacttaatatcatttatcttttaaattttatca 23646825  T

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Target: scaffold0287 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 506 - 599
Alignment:
Q  113 aaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttat 206  Q
    |||||||||| |||||||| |||| |||||| ||||||| |||||| |||||||||||||||||| ||||| | |||| | |||||||||||||    
T  506 aaaatttaaaagagaaatacttaaatcacataacttaatttcattttatttttaaattttatcatatacgtatgtgtgttcaaatgaattttat 599  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 3496965 - 3497058
Alignment:
Q  113 aaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttat 206  Q
    |||||||||| |||||||| |||| |||||| ||||||| |||||| |||||||||||||||||| ||||| | |||| | |||||||||||||    
T  3496965 aaaatttaaaagagaaatacttaaatcacataacttaatttcattttatttttaaattttatcatatacgtatgtgtgttcaaatgaattttat 3497058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 44397483 - 44397418
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatca 176  Q
    |||||||||||| |||||||| || |||||||||||||||||| |||||  |||||||||||||||    
T  44397483 ataaaatttaaaagagaaataatttagtcacatcacttaatatgatttctcttttaaattttatca 44397418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 5968385 - 5968452
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatc 178  Q
    |||||||||||| |||||||| || | |||||| |||||||||||||||  |||||||||||||||||    
T  5968385 ataaaatttaaaagagaaataatttaatcacattacttaatatcatttctattttaaattttatcatc 5968452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 34768911 - 34768996
Alignment:
Q  92 ttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcat 177  Q
    ||||| ||||||| ||||||||||||||||| ||  |||| | |||||||||||||||||||||||||| |||| |||||||||||    
T  34768911 ttggacacacacataaataataaaatttaaaagatgaataataaagtcacatcacttaatatcatttcactttttaattttatcat 34768996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 2684875 - 2685005
Alignment:
Q  98 acacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaat 197  Q
    |||||||  ||| |||| ||||||| |||||||| |||||||| ||||||| |||||||||   |||||| |||||| ||||| |||| |||   |||||    
T  2684875 acacacatgaatgataatatttaaaagagaaataattaagtcaaatcacttgatatcattttccttttaagttttattatctatgtgtgtgtc--taaat 2684972  T
Q  198 gaattttatttagatttgtggctatgtaagagtt 231  Q
     ||||||||| || |||||| |||||||||||||    
T  2684973 aaattttatt-aggtttgtgcctatgtaagagtt 2685005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 20164468 - 20164394
Alignment:
Q  106 aaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatcta 180  Q
    |||| ||||| | |||| |||||||| |||||||| ||| ||||| ||||||||| ||||| |||||||||||||    
T  20164468 aaatgataaagtataaaagagaaataattaagtcatatcgcttaacatcatttcacttttacattttatcatcta 20164394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 11404725 - 11404677
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttc 159  Q
    |||||||||||| |||||||| || |||||||||| |||||||||||||    
T  11404725 ataaaatttaaaagagaaataatttagtcacatcagttaatatcatttc 11404677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 14502698 - 14502779
Alignment:
Q  68 acaacctcaaatcaaaagtatttgttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaa 150  Q
    |||||||||||||||||||||||    |  ||||||  |||| |||||||||||| |||||||| || |||||||||||||||    
T  14502698 acaacctcaaatcaaaagtatttaggcgc-acacacgtaaatgataaaatttaaaagagaaataatttagtcacatcacttaa 14502779  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 53718307 - 53718242
Alignment:
Q  112 taaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcat 177  Q
    ||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||||||||||    
T  53718307 taaaatttaaaagagaaataatttaatcacatcacttaatatcatttcatttttaaattttatcat 53718242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 16461402 - 16461524
Alignment:
Q  106 aaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaatttta 205  Q
    ||||| ||||||||||| | ||| || || ||||| ||||||||||||||||||| |||||||||||||||||||  ||||| | |  | ||||| ||||    
T  16461402 aaatagtaaaatttaaaagggaa-taatttagtcatatcacttaatatcatttcacttttaaattttatcatcta--tgtatatacccatatgaacttta 16461498  T
Q  206 tttagatttgtggctatgtaagagtt 231  Q
    ||||| |||||| |||||||||||||    
T  16461499 tttaggtttgtgtctatgtaagagtt 16461524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 13843215 - 13843088
Alignment:
Q  106 aaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaatttta 205  Q
    |||| |||||||||||| |||||||| | | ||||||||| ||||||| |||||| ||||||||||||| ||||| |||| |||    |||| || ||||    
T  13843215 aaatgataaaatttaaaagagaaataataatgtcacatcatttaatattatttcacttttaaattttatgatctatgtgtgtgtatcgaaataaacttta 13843116  T
Q  206 tttagatttgtggctatgtaagagttgc 233  Q
    ||||| ||| || |||| ||||||||||    
T  13843115 tttaggtttatgtctatataagagttgc 13843088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 9088174 - 9088113
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaatttt 172  Q
    |||||||||||| ||||||||||| |||||||| |||||||||||||||  |||||||||||    
T  9088174 ataaaatttaaaagagaaatagtttagtcacattacttaatatcatttctcttttaaatttt 9088113  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 13869952 - 13869874
Alignment:
Q  155 atttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttatttagatttgtggctatgtaagagttgc 233  Q
    |||||||||||||||||||| ||| | |||||||||   ||||||||||||||||| ||| || |||| ||||||||||    
T  13869952 atttcatttttaaattttatgatccatgtgtatgtgtcgaaatgaattttatttaggtttatgtctatataagagttgc 13869874  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Original strand, 31012560 - 31012664
Alignment:
Q  68 acaacctcaaatcaaaagtatttgttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaa 167  Q
    |||||| |||||||||||||||||  | | ||||||| | ||  ||||| ||||| |||||||| || |||||||||| |||||||||||||| || |||    
T  31012560 acaaccccaaatcaaaagtatttgg-gcaaacacacatatatggtaaaacttaaaagagaaataatttagtcacatcatttaatatcatttcacttctaa 31012658  T
Q  168 atttta 173  Q
    ||||||    
T  31012659 atttta 31012664  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 5579783 - 5579846
Alignment:
Q  111 ataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttat 174  Q
    |||||||||||| |||||||| || |||||||||| ||||||||||||   |||||||||||||    
T  5579783 ataaaatttaaaagagaaataatttagtcacatcatttaatatcatttttcttttaaattttat 5579846  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 50116361 - 50116282
Alignment:
Q  98 acacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatcat 177  Q
    ||||||| |||| |||||||||||| |||||||| || | ||||| |||||||||| ||||   ||||||||||||||||    
T  50116361 acacacaaaaatgataaaatttaaaagagaaataatttaatcacaacacttaatattatttatcttttaaattttatcat 50116282  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 43389695 - 43389649
Alignment:
Q  128 aatagttaagtcacatcacttaatatcatttcatttttaaattttat 174  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||    
T  43389695 aatagtttagtcacatcacttaatatcgtctcatttttaaattttat 43389649  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 17056071 - 17055997
Alignment:
Q  99 cacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaatttta 173  Q
    |||||| |||| |||||||||||| || ||||| || |||| || |||||||||||||||   ||||||||||||    
T  17056071 cacacataaatgataaaatttaaaagaaaaataatttagtctcaacacttaatatcatttatattttaaatttta 17055997  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 22227012 - 22227082
Alignment:
Q  106 aaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatca 176  Q
    |||| |||||||||||| |||||||| || |||||||| | |||||||||||||   |||| |||||||||    
T  22227012 aaatgataaaatttaaaagagaaataatttagtcacataaattaatatcatttctcatttatattttatca 22227082  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 22606970 - 22607019
Alignment:
Q  125 agaaatagttaagtcacatcacttaatatcatttcatttttaaattttat 174  Q
    ||||||| || ||||||||||||||||| ||||||  |||||||||||||    
T  22606970 agaaataatttagtcacatcacttaataacatttctcttttaaattttat 22607019  T

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Target: scaffold0019 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 233
Target Start/End: Complemental strand, 69111 - 69026
Alignment:
Q  148 taatatcatttcatttttaaattttatcatctacgtgtatgtgcttaaatgaattttatttagatttgtggctatgtaagagttgc 233  Q
    |||||| ||||||||||||||||||||| | ||||||||||     ||||||||||||||||  |||||| |||||||||||||||    
T  69111 taatattatttcatttttaaattttatcttttacgtgtatgcatccaaatgaattttatttatgtttgtgtctatgtaagagttgc 69026  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 51818409 - 51818493
Alignment:
Q  92 ttggatacacacacaaataataaaatttaaatgagaaatagttaagtcacatcacttaatatcatttcatttttaaattttatca 176  Q
    ||||| ||||||| |||| |||||||||||| || ||||| || | |||||||||||||||| ||||   |||||||||||||||    
T  51818409 ttggacacacacataaatgataaaatttaaaagaaaaataatttaatcacatcacttaatattatttttcttttaaattttatca 51818493  T

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