View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7174_low_2 (Length: 479)
Name: NF7174_low_2
Description: NF7174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7174_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Complemental strand, 35905740 - 35905289
Alignment:
| Q |
12 |
ggcggatgttattggttggacaggcggtaaaggagtgcctaattataaggattatgggatttatgttcaagatcaggcaggtgatgattaactttggctt |
111 |
Q |
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| T |
35905740 |
ggcggatgttattggttggacaggcagtaaaggagtgcctacttataaggattatgtgatttatgttcaagatcaggcaggtgatgatcaactttggctt |
35905641 |
T |
|
| Q |
112 |
gcattgcatccatcgcccgattcaaaaacggaaaattatgatgctaaactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaa |
211 |
Q |
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|||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905640 |
gcattgcatccatcgcccgattcaaagccggaatattatgatgctatactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaa |
35905541 |
T |
|
| Q |
212 |
atcctcaaccttctgatatgatgattgaacatgacaatcaggnnnnnnnnnnnnnnnnnnnnnnnnntggtcataataagagttttgttattggtggtgc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35905540 |
atcctcaaccttctgatatgatgattgaacatgacaatcaggaaaaaacttttcaaaacaaaaaaaatggtcataataagagttttgttattggtggtgc |
35905441 |
T |
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| Q |
312 |
tgccggtggtgcggcaggttttgcaattgttgctgctatatgtgttgctgttcatcacaggaagaagagagcaccaggtaatgttattcttgatagaagt |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905440 |
tgccggtggtgcggcaggttttgcaattgttgctgctatatgtgttgctgttcatcacaggaagaagagagcaccaggtaatgttattcttgatagaagt |
35905341 |
T |
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| Q |
412 |
ctttgataagaaaaagtaaaatgaaaattatattcataacgagagaatatga |
463 |
Q |
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| T |
35905340 |
ctttgataagaaaaagtaaaatgaaaattatattgataacgagagaatatga |
35905289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 450
Target Start/End: Complemental strand, 30522167 - 30522111
Alignment:
| Q |
395 |
ttattcttgatagaagtctttgata-agaaaaagtaaaatgaaaattatattcataa |
450 |
Q |
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||||| |||||||||||| |||||| ||||||||||||||| |||||||||| |||| |
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| T |
30522167 |
ttatttttgatagaagtcattgatatagaaaaagtaaaatggaaattatattgataa |
30522111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 47623824 - 47623900
Alignment:
| Q |
148 |
tatgatgctaaactcaatggtgttgagatattcaaactcaatgatactgatttgtctggaccaaatcctcaaccttc |
224 |
Q |
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| T |
47623824 |
tatgatgctatactcaatggggtggagatattcaagctcaatgacacggacttgtctggccccaatcctcagccttc |
47623900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 484018 - 483972
Alignment:
| Q |
396 |
tattcttgatagaagtctttgataaga-aaaagtaaaatgaaaatta |
441 |
Q |
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||||||| ||||||||| ||||||||| ||||||||||||||||||| |
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| T |
484018 |
tattcttaatagaagtcattgataagagaaaagtaaaatgaaaatta |
483972 |
T |
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